Variant report

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs538544945	chr10:28275953-28275954	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs556934758	chr10:28275973-28275974	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs571965264	chr10:28275980-28275981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs539088220	chr10:28276035-28276036	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs557721723	chr10:28276099-28276100	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs61845064	chr10:28276119-28276120	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs528361881	chr10:28276179-28276180	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs142543096	chr10:28276180-28276181	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:45)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	22341455	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28239800-28287200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28251000-28283800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:28262600-28276000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:28265800-28278600	Weak transcription	Ovary	ovary
5	chr10:28271800-28281000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:28275800-28276200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:28276000-28276200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:28276000-28276400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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