Variant report

Variant	esv3350471
Chromosome Location	chr19:19805502-19807500
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 49 )

Variant overlapped rSNPs/rCNVs (count:86 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs530558784	chr19:19805514-19805515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs574375311	chr19:19805520-19805521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs114429660	chr19:19805554-19805555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs67433524	chr19:19805574-19805575	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs180784362	chr19:19805577-19805578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs567327950	chr19:19805617-19805618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs12972143	chr19:19805635-19805636	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs559105500	chr19:19805649-19805650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs528240169	chr19:19805668-19805669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs547892681	chr19:19805675-19805676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs533071235	chr19:19805686-19805687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112571202	chr19:19805738-19805739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs550191820	chr19:19805746-19805747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs146445626	chr19:19805747-19805748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs144434116	chr19:19805771-19805772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs559231145	chr19:19805774-19805775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs143124388	chr19:19805777-19805778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs185193579	chr19:19805783-19805784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs7253613	chr19:19805800-19805801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs571254833	chr19:19805813-19805814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs146663133	chr19:19805860-19805861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs574436862	chr19:19805871-19805872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs543060633	chr19:19805881-19805882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs8107026	chr19:19805905-19805906	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs34424415	chr19:19805917-19805918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs8106945	chr19:19806011-19806012	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs150477667	chr19:19806015-19806016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs559195428	chr19:19806114-19806115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528294026	chr19:19806154-19806155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs541620180	chr19:19806171-19806172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs8110701	chr19:19806219-19806220	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs530137697	chr19:19806246-19806247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs550230258	chr19:19806247-19806248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs565372424	chr19:19806268-19806269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs371918434	chr19:19806269-19806270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs146145653	chr19:19806326-19806327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs532517471	chr19:19806330-19806331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200241001	chr19:19806341-19806342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs373412490	chr19:19806342-19806343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs71309628	chr19:19806344-19806345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs12979879	chr19:19806345-19806346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs12979884	chr19:19806348-19806349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs552905629	chr19:19806378-19806379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs369237980	chr19:19806379-19806380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs34345569	chr19:19806449-19806450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs188448062	chr19:19806467-19806468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs34402383	chr19:19806528-19806529	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs35352269	chr19:19806529-19806530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs146815949	chr19:19806534-19806535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576884311	chr19:19806588-19806589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:49)

Disease	PMID	Source
Prostate cancer	16573809	CNVD
Lung cancer	17297452	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Basal cell lymphoma	21115979	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Lung cancer	18438408	CNVD
Breast cancer	20409316	CNVD
Cancer	17160897	CNVD
Cancer	17440070	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
early-passage human iPS cells	21368824	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19791200-19816800	Weak transcription	Right Ventricle	heart
2	chr19:19791600-19810000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:19792400-19810000	Weak transcription	Ovary	ovary
4	chr19:19795400-19811200	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links