Variant report

Variant	esv3350834
Chromosome Location	chr1:215403395-215403837
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215398980..215400593-chr1:215403515..215406240,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201820502	chr1:215403399-215403400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs376473501	chr1:215403432-215403433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376990018	chr1:215403436-215403437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs12745321	chr1:215403437-215403438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs12726695	chr1:215403438-215403439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs201060603	chr1:215403439-215403440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199655917	chr1:215403447-215403448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs371854874	chr1:215403449-215403450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs71167816	chr1:215403464-215403465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs59050433	chr1:215403470-215403471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs564001187	chr1:215403473-215403474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs115533614	chr1:215403476-215403477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs549701447	chr1:215403494-215403495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs543915560	chr1:215403507-215403508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs539806289	chr1:215403543-215403544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs549540845	chr1:215403559-215403560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs12410194	chr1:215403600-215403601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562004119	chr1:215403612-215403613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs571174851	chr1:215403618-215403619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs371437664	chr1:215403643-215403644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs555589469	chr1:215403667-215403668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs12402782	chr1:215403683-215403684	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs562304584	chr1:215403693-215403694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs534984954	chr1:215403698-215403699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs558006875	chr1:215403720-215403721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs147863158	chr1:215403728-215403729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs548454519	chr1:215403754-215403755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs113212651	chr1:215403789-215403790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs116335842	chr1:215403792-215403793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs373897689	chr1:215403812-215403813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs201115495	chr1:215403820-215403821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs80025208	chr1:215403821-215403822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs11120525	chr1:215403823-215403824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs574242331	chr1:215403825-215403826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Liposarcoma	21253554	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
Multiple myeloma	16461302	CNVD
van der Woude syndrome	22470819	CNVD
van der Woude syndrome	20818247	CNVD
T-cell lymphomas	19863542	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hepatocellular carcinoma	18803288	CNVD
Urothelial tumor	18831757	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21720365	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Medulloblastoma	16783165	CNVD
Basal cell lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Holoprosencephaly	19184110	CNVD
Breast cancer	21069454	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Mental retardation	19951919	CNVD
Non-syndromic sensorineural hearing loss	17873649	CNVD
Acute myeloid leukemia	17268525	CNVD
Lung cancer	16740712	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17053054	CNVD
Developmental delay	21147756	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215380600-215408000	Weak transcription	Osteobl	bone
2	chr1:215388600-215408200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:215392000-215408000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215394000-215407800	Weak transcription	NHDF-Ad	bronchial

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