Variant report

Variant	esv3350874
Chromosome Location	chr6:69370256-69372654
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:69361875..69366635-chr6:69366839..69371569,10	K562	blood:
2	chr6:69364690..69367306-chr6:69368059..69370561,2	K562	blood:
3	chr6:69359484..69364655-chr6:69364836..69370262,9	K562	blood:
4	chr6:69367803..69371635-chr6:69469179..69471663,3	K562	blood:
5	chr6:69348595..69350906-chr6:69368329..69371179,2	K562	blood:
6	chr6:69368749..69371635-chr6:69469945..69471663,2	K562	blood:
7	chr6:69369288..69371482-chr6:69451738..69454482,2	K562	blood:
8	chr6:69351017..69353999-chr6:69369365..69372357,2	K562	blood:
9	chr6:69369127..69370671-chr6:69372780..69375655,2	K562	blood:

No data

Extended variants
information (count: 89 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:89 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142589434	chr6:69370300-69370301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs554127644	chr6:69370324-69370325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs573867604	chr6:69370352-69370353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs542873943	chr6:69370394-69370395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs150981950	chr6:69370515-69370516	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs190650421	chr6:69370604-69370605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs368065053	chr6:69370652-69370653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs140834063	chr6:69370698-69370699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs77390937	chr6:69370717-69370718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs549022948	chr6:69370722-69370723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs193023064	chr6:69370762-69370763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs560066632	chr6:69370812-69370813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs67460103	chr6:69370830-69370831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs529424914	chr6:69370894-69370895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs534319992	chr6:69370908-69370909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs77088610	chr6:69370977-69370978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs571048119	chr6:69371038-69371039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs72897146	chr6:69371073-69371074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs374895338	chr6:69371099-69371100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs184647696	chr6:69371128-69371129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs199564831	chr6:69371185-69371186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs375226733	chr6:69371196-69371197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs57662286	chr6:69371197-69371198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs7773493	chr6:69371215-69371216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs147855309	chr6:69371217-69371218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs5025487	chr6:69371219-69371220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs5025488	chr6:69371221-69371222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs7756281	chr6:69371231-69371232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs573136646	chr6:69371232-69371233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs5877164	chr6:69371233-69371234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs71745062	chr6:69371234-69371235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs181303556	chr6:69371235-69371236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs147032078	chr6:69371237-69371238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs536443421	chr6:69371255-69371256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs2341767	chr6:69371257-69371258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201853123	chr6:69371273-69371274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs3056012	chr6:69371282-69371283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs5877165	chr6:69371300-69371301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs556355162	chr6:69371307-69371308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs569903572	chr6:69371308-69371309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs368887224	chr6:69371321-69371322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs371914747	chr6:69371324-69371325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs376501817	chr6:69371325-69371326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs555324927	chr6:69371351-69371352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs376497263	chr6:69371362-69371363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs200253656	chr6:69371375-69371376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs6149629	chr6:69371385-69371386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs374624366	chr6:69371412-69371413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543174547	chr6:69371421-69371422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs9346232	chr6:69371430-69371431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69365800-69377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69367400-69371800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69367600-69370400	Weak transcription	Brain Substantia Nigra	brain
6	chr6:69367600-69377600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:69367800-69371600	Weak transcription	Fetal Lung	lung
8	chr6:69368400-69371800	Weak transcription	Brain Anterior Caudate	brain
9	chr6:69368400-69377800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:69368600-69376000	Weak transcription	K562	blood
11	chr6:69370400-69370600	Enhancers	Brain Substantia Nigra	brain
12	chr6:69371600-69372000	Enhancers	Fetal Lung	lung
13	chr6:69371800-69372000	Enhancers	Brain Anterior Caudate	brain
14	chr6:69371800-69372400	Enhancers	Brain Angular Gyrus	brain
15	chr6:69372000-69374400	Weak transcription	Fetal Lung	lung
16	chr6:69372400-69376200	Weak transcription	Brain Angular Gyrus	brain

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