Variant report
Variant | esv3350915 |
---|---|
Chromosome Location | chr20:15559226-15559536 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs562651151 | chr20:15559227-15559228 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs564075512 | chr20:15559229-15559230 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs71190191 | chr20:15559285-15559286 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs418080 | chr20:15559323-15559324 | Weak transcription Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
5 | rs558398864 | chr20:15559380-15559381 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs115087708 | chr20:15559396-15559397 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs192373686 | chr20:15559405-15559406 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs143072143 | chr20:15559422-15559423 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs73897702 | chr20:15559438-15559439 | Weak transcription Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
10 | rs138498175 | chr20:15559452-15559453 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs570517440 | chr20:15559454-15559455 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs531533475 | chr20:15559457-15559458 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs184399599 | chr20:15559463-15559464 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs146703953 | chr20:15559488-15559489 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs36105015 | chr20:15559495-15559496 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs189427640 | chr20:15559524-15559525 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs554234337 | chr20:15559534-15559535 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Breast cancer | 16397240 | CNVD |
abortions and stillbirths | 19751515 | CNVD |
Wilms tumour | 21544195 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 16272173 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Oral cancer | 19627613 | CNVD |
colon cancer | 17210682 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 16751803 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Central neurocytomas | 17123091 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Gastric cancer | 17908304 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Colorectal cancer | 21645411 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Autism | 22495311 | CNVD |
Glaucoma | 21310917 | CNVD |
Alagille syndrome | 22470819 | CNVD |
Lung cancer | 16773561 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Alagille syndrome | 17576883 | CNVD |
Anaplastic large cell lymphoma | 18179710 | CNVD |
Prostate cancer | 18632612 | CNVD |
Ewing''s sarcoma | 18628472 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Leukemia | 18628472 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Kabuki syndrome | 21720541 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Neurocytoma | 17123091 | CNVD |
Glioblastoma multiforme | 21138945 | CNVD |
Cancer | 20164919 | CNVD |
Multiple sclerosis | 20663923 | CNVD |
Schizophrenia | 20663923 | CNVD |
brain infarct | 20663923 | CNVD |
Breast cancer | 22522925 | CNVD |
Cancer | 20164920 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Breast cancer | 21364760 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15543000-15562200 | Weak transcription | Stomach Smooth Muscle | stomach |
2 | chr20:15558400-15559600 | Enhancers | Pancreatic Islets | Pancreatic Islet |
3 | chr20:15558800-15559600 | Enhancers | Fetal Intestine Small | intestine |
4 | chr20:15559000-15563000 | Weak transcription | Colon Smooth Muscle | Colon |