Variant report

Variant	esv3351173
Chromosome Location	chr10:42661505-42667403
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 966 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:966 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200089512	chr10:42661513-42661514	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
2	rs373565231	chr10:42661519-42661520	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
3	rs10450489	chr10:42661527-42661528	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
4	rs202176460	chr10:42661532-42661533	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
5	rs182466936	chr10:42661546-42661547	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
6	rs200393092	chr10:42661558-42661559	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
7	rs200981671	chr10:42661564-42661565	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
8	rs576690644	chr10:42661567-42661568	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
9	rs143619987	chr10:42661571-42661572	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
10	rs200537718	chr10:42661574-42661575	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
11	rs201583016	chr10:42661587-42661588	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
12	rs34469509	chr10:42661589-42661590	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
13	rs185572052	chr10:42661590-42661591	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
14	rs147514884	chr10:42661593-42661594	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
15	rs200434213	chr10:42661599-42661600	ZNF genes & repeats Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
16	rs111209056	chr10:42661606-42661607	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs376536168	chr10:42661622-42661623	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs376768618	chr10:42661623-42661624	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs111209057	chr10:42661629-42661630	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs367700643	chr10:42661636-42661637	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs529985010	chr10:42661642-42661643	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs200627557	chr10:42661648-42661649	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs111209058	chr10:42661662-42661663	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs199525232	chr10:42661665-42661666	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs111209059	chr10:42661667-42661668	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs201987408	chr10:42661683-42661684	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs551869623	chr10:42661684-42661685	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs200080661	chr10:42661689-42661690	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs375240521	chr10:42661693-42661694	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs373829625	chr10:42661697-42661698	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565407738	chr10:42661699-42661700	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs367931505	chr10:42661700-42661701	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs534319757	chr10:42661707-42661708	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs141111620	chr10:42661709-42661710	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs554224659	chr10:42661713-42661714	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs111217062	chr10:42661717-42661718	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201625932	chr10:42661719-42661720	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs568035739	chr10:42661720-42661721	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs370865814	chr10:42661727-42661728	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs62649151	chr10:42661729-42661730	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs138945322	chr10:42661742-42661743	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs368042910	chr10:42661756-42661757	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs62649152	chr10:42661758-42661759	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs536588599	chr10:42661764-42661765	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs372899101	chr10:42661769-42661770	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs576729280	chr10:42661771-42661772	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs545591330	chr10:42661773-42661774	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs370627325	chr10:42661776-42661777	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs559099393	chr10:42661778-42661779	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs202013462	chr10:42661782-42661783	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42655800-42668200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:42660000-42668200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr10:42660400-42668000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:42660400-42668000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr10:42660600-42668000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:42661000-42667600	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:42661200-42661600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:42661200-42661600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:42661200-42661600	ZNF genes & repeats	Pancreas	Pancrea
10	chr10:42661200-42661600	ZNF genes & repeats	Right Atrium	heart
11	chr10:42661200-42661600	ZNF genes & repeats	HSMMtube	muscle
12	chr10:42661200-42661600	ZNF genes & repeats	NHDF-Ad	bronchial
13	chr10:42661200-42661800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:42661200-42661800	ZNF genes & repeats	Aorta	Aorta
15	chr10:42661200-42661800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:42661200-42661800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
17	chr10:42661200-42661800	ZNF genes & repeats	Spleen	Spleen
18	chr10:42661200-42662000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
19	chr10:42661200-42662000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
20	chr10:42661200-42662000	ZNF genes & repeats	Gastric	stomach
21	chr10:42661200-42662000	ZNF genes & repeats	Dnd41	blood
22	chr10:42661200-42662200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:42661200-42662600	ZNF genes & repeats	Brain Hippocampus Middle	brain
24	chr10:42661200-42663000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:42661200-42663200	ZNF genes & repeats	Brain Anterior Caudate	brain
26	chr10:42661200-42663200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
27	chr10:42661200-42664400	ZNF genes & repeats	Brain Angular Gyrus	brain
28	chr10:42661200-42667000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
29	chr10:42661200-42667200	ZNF genes & repeats	Brain Substantia Nigra	brain
30	chr10:42661200-42667400	ZNF genes & repeats	K562	blood
31	chr10:42661200-42667600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
32	chr10:42661200-42667600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:42661200-42667600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
34	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
36	chr10:42661200-42667600	ZNF genes & repeats	Fetal Brain Male	brain
37	chr10:42661200-42667600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
38	chr10:42661200-42667800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
39	chr10:42661200-42667800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:42661200-42667800	ZNF genes & repeats	Adipose Nuclei	Adipose
41	chr10:42661200-42667800	ZNF genes & repeats	Fetal Heart	heart
42	chr10:42661200-42667800	ZNF genes & repeats	Fetal Lung	lung
43	chr10:42661200-42668000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
44	chr10:42661200-42668200	ZNF genes & repeats	Liver	Liver
45	chr10:42661400-42661600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:42661400-42661800	ZNF genes & repeats	NHEK	skin
47	chr10:42661400-42667200	ZNF genes & repeats	Primary B cells from cord blood	blood
48	chr10:42661400-42667200	ZNF genes & repeats	GM12878-XiMat	blood
49	chr10:42661400-42667400	ZNF genes & repeats	HepG2	liver
50	chr10:42661400-42667600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell

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