Variant report

Variant	esv3351593
Chromosome Location	chr17:38053068-38053577
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZPBP2-4	chr17:38052400-38053460	NONHSAT053492
2	lnc-ZPBP2-4	chr17:38053546-38054937	NONHSAT053492

Extended variants
information (count: 18 )
Associated
traits (count: 124 )

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142428657	chr17:38053070-38053071	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs186109971	chr17:38053088-38053089	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs116485825	chr17:38053113-38053114	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs557953830	chr17:38053114-38053115	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs181043051	chr17:38053131-38053132	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs534310559	chr17:38053194-38053195	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs12453507	chr17:38053207-38053208	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs574089605	chr17:38053210-38053211	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs544869260	chr17:38053233-38053234	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs78754215	chr17:38053251-38053252	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs531069404	chr17:38053330-38053331	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs146441952	chr17:38053342-38053343	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs191032053	chr17:38053405-38053406	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs544607424	chr17:38053443-38053444	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs541025987	chr17:38053492-38053493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs560543974	chr17:38053515-38053516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs183348023	chr17:38053533-38053534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs546300572	chr17:38053548-38053549	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:124)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Ewing''s sarcoma	21437220	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Melanoma	18172304	CNVD
Moyamoya disease	22323933	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ovarian cancer	21781307	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell lymphomas	19863542	CNVD
Cancer	16751803	CNVD
Chordoma	21602918	CNVD
Neurofibromatosis	20686819	CNVD
Peripheral nerve sheath tumors	20686819	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	17897457	CNVD
Neuroblastoma	17327916	CNVD
Breast cancer	21264507	CNVD
Endometrial cancer	22040021	CNVD
Neuroblastoma	21484798	CNVD
Breast cancer	22028636	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute myeloid leukemia	20724749	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17157792	CNVD
Bladder cancer	19088036	CNVD
Gastric cancer	17167181	CNVD
Breast cancer	19287154	CNVD
Leukemia	20874852	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Neuroblastoma	18664255	CNVD
Neuroblastoma	17533364	CNVD
Human rectal carcinomas	16397240	CNVD
Meningioma	19431122	CNVD
Neurocytoma	17123091	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastric cancer	24379144	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Gastric cancer	18160780	CNVD
Hepatocellular carcinoma	16785998	CNVD
Breast cancer	17850661	CNVD
Primary lung adenocarcinoma	16799635	CNVD
HIV/AIDS	18848619	CNVD
Rheumatoid arthritis	19220326	CNVD
Rheumatoid arthritis	18848619	CNVD
Systemic lupus erythematosus	19220326	CNVD
Systemic lupus erythematosus	18848619	CNVD
Type 1 diabetes	19220326	CNVD
HIV/AIDS	17330138	CNVD
Basal cell lymphoma	17053054	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Acute monocytic leukemia	16498392	CNVD
Breast cancer	20409316	CNVD
Myelodysplastic syndrome	18663149	CNVD
Breast cancer	17457667	CNVD
Breast cancer	16951389	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16620391	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22048815	CNVD
Breast cancer	17603634	CNVD
Follicular lymphoma	20505157	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	20953835	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Sezary syndrome	18413736	CNVD
Urothelial carcinoma	21177765	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Disease	22962312	CNVD
Mental retardation	20152051	CNVD
Mental retardation	19951919	CNVD
Mental retardation	22817714	CNVD
Mental retardation	21956041	CNVD
Brain cancer	19584924	CNVD
Glioblastoma multiforme	22286061	CNVD
Schizophrenia	21399695	CNVD
Non-syndromic sensorineural hearing loss	19165922	CNVD
Prader-willi syndrome	20588305	CNVD
17q21.31 microdeletion syndrome	16940994	CNVD
Non-syndromic sensorineural hearing loss	21084979	CNVD
17q21.31 microdeletion syndrome	22283845	CNVD
Intellectual disability	22194194	CNVD
17q21.31 microdeletion syndrome	20606400	CNVD
17q21.31 microdeletion syndrome	18628315	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
TAR Syndrome	17847015	CNVD
Neuroblastoma	18923191	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38046000-38059800	Weak transcription	Liver	Liver
2	chr17:38047400-38059200	Weak transcription	Primary T cells from cord blood	blood
3	chr17:38049200-38059800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:38049200-38075400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr17:38051000-38059000	Weak transcription	Thymus	Thymus
6	chr17:38051200-38059400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:38051400-38059400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:38051400-38059800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr17:38051600-38059000	Weak transcription	Fetal Thymus	thymus
10	chr17:38051600-38059600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:38052000-38059800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr17:38052400-38059400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:38052600-38074200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr17:38052800-38058800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr17:38053000-38061200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr17:38053200-38061000	Weak transcription	Brain Inferior Temporal Lobe	brain

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