Variant report

Variant	esv3352508
Chromosome Location	chr6:37786924-37789022
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:766)
CpG islands
(count:427)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:766 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:37785796-37787564	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:37788776-37788838	K562	blood:	n/a	n/a
3	ARID3A	chr6:37785949-37787564	K562	blood:	n/a	n/a
4	ATF1	chr6:37788108-37788474	K562	blood:	n/a	n/a
5	ATF2	chr6:37786834-37787256	GM12878	blood:	n/a	n/a
6	ATF2	chr6:37786714-37787107	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr6:37786226-37787366	GM12878	blood:	n/a	n/a
8	ATF3	chr6:37788129-37788438	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF3	chr6:37787964-37788556	HCT-116	colon:	n/a	n/a
10	ATF3	chr6:37787999-37788521	K562	blood:	n/a	n/a
11	ATF3	chr6:37788082-37788372	HepG2	liver:	n/a	n/a
12	ATF3	chr6:37788104-37788363	K562	blood:	n/a	n/a
13	ATF3	chr6:37788065-37788392	H1-hESC	embryonic stem cell:	n/a	n/a
14	BACH1	chr6:37786911-37787111	K562	blood:	n/a	n/a
15	BATF	chr6:37788178-37788389	GM12878	blood:	n/a	n/a
16	BATF	chr6:37786935-37787267	GM12878	blood:	n/a	n/a
17	BATF	chr6:37788053-37788351	GM12878	blood:	n/a	n/a
18	BCL3	chr6:37786404-37787103	A549	lung:	n/a	n/a
19	BCLAF1	chr6:37786971-37787414	GM12878	blood:	n/a	chr6:37787380-37787393 chr6:37787223-37787232
20	BCLAF1	chr6:37786018-37786963	GM12878	blood:	n/a	n/a
21	BHLHE40	chr6:37786223-37787696	GM12878	blood:	n/a	chr6:37787322-37787338 chr6:37787530-37787546
22	BHLHE40	chr6:37786652-37787792	HepG2	liver:	n/a	chr6:37787322-37787338 chr6:37787530-37787546
23	BHLHE40	chr6:37786847-37787610	A549	lung:	n/a	chr6:37787322-37787338 chr6:37787530-37787546
24	BHLHE40	chr6:37786297-37787703	K562	blood:	n/a	chr6:37787322-37787338 chr6:37787530-37787546
25	BHLHE40	chr6:37788044-37788696	GM12878	blood:	n/a	n/a
26	BRCA1	chr6:37786797-37787485	H1-hESC	embryonic stem cell:	n/a	n/a
27	BRCA1	chr6:37786368-37787573	Hela-S3	cervix:	n/a	n/a
28	BRCA1	chr6:37786832-37787608	HepG2	liver:	n/a	n/a
29	BRCA1	chr6:37786708-37787619	GM12878	blood:	n/a	n/a
30	CBX3	chr6:37786222-37787590	K562	blood:	n/a	n/a
31	CCNT2	chr6:37786457-37787667	K562	blood:	n/a	chr6:37787260-37787269
32	CCNT2	chr6:37788062-37788399	K562	blood:	n/a	n/a
33	CEBPB	chr6:37788081-37788435	HepG2	liver:	n/a	chr6:37788250-37788261
34	CEBPB	chr6:37787956-37788622	HCT-116	colon:	n/a	chr6:37788250-37788261
35	CEBPB	chr6:37788066-37788466	IMR90	lung:	n/a	chr6:37788250-37788261
36	CEBPB	chr6:37788137-37788304	HepG2	liver:	n/a	chr6:37788250-37788261
37	CEBPB	chr6:37788022-37788520	MCF-7	breast:	n/a	chr6:37788250-37788261
38	CEBPB	chr6:37786215-37787603	Hela-S3	cervix:	n/a	n/a
39	CEBPB	chr6:37788010-37788503	ECC-1	luminal epithelium:	n/a	chr6:37788250-37788261
40	CEBPB	chr6:37787206-37787361	HepG2	liver:	n/a	n/a
41	CEBPB	chr6:37788066-37788460	K562	blood:	n/a	chr6:37788250-37788261
42	CEBPB	chr6:37788050-37788459	HepG2	liver:	n/a	chr6:37788250-37788261
43	CEBPB	chr6:37788066-37788449	H1-hESC	embryonic stem cell:	n/a	chr6:37788250-37788261
44	CEBPB	chr6:37786507-37787151	K562	blood:	n/a	n/a
45	CEBPB	chr6:37786343-37787237	K562	blood:	n/a	n/a
46	CEBPB	chr6:37787994-37788528	K562	blood:	n/a	chr6:37788250-37788261
47	CEBPB	chr6:37787977-37788544	ECC-1	luminal epithelium:	n/a	chr6:37788250-37788261
48	CEBPB	chr6:37788104-37788450	A549	lung:	n/a	chr6:37788250-37788261
49	CEBPB	chr6:37787954-37788563	HCT-116	colon:	n/a	chr6:37788250-37788261
50	CEBPB	chr6:37788074-37788363	K562	blood:	n/a	chr6:37788250-37788261

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:37788018-37788068	Hela-S3	cervix:	n/a
2	chr6:37788171-37788221	HCM	heart:	n/a
3	chr6:37788171-37788221	GM19239	blood:	n/a
4	chr6:37787165-37787215	HRCEpiC	kidney:	n/a
5	chr6:37788171-37788221	PFSK-1	brain:	n/a
6	chr6:37787165-37787215	U87	brain:	n/a
7	chr6:37787052-37787102	GM12892	blood:	n/a
8	chr6:37787052-37787102	AG10803	skin:	n/a
9	chr6:37787739-37787789	HUVEC	blood vessel:	n/a
10	chr6:37787165-37787215	GM12891	blood:	n/a
11	chr6:37787165-37787215	SK-N-SH_RA	brain:	n/a
12	chr6:37787045-37787095	HUVEC	blood vessel:	n/a
13	chr6:37787045-37787095	AG09309	skin:	n/a
14	chr6:37787045-37787095	H1-hESC	embryonic stem cell:	embryo
15	chr6:37787739-37787789	AG04450	lung:	fetal
16	chr6:37787045-37787095	T-47D	breast:	n/a
17	chr6:37787739-37787789	U87	brain:	n/a
18	chr6:37788018-37788068	SK-N-MC	brain:	n/a
19	chr6:37787165-37787215	ProgFib	skin:	n/a
20	chr6:37788171-37788221	T-47D	breast:	n/a
21	chr6:37788018-37788068	ProgFib	skin:	n/a
22	chr6:37787209-37787259	A549	lung:	n/a
23	chr6:37787045-37787095	U87	brain:	n/a
24	chr6:37788018-37788068	GM12878	blood:	n/a
25	chr6:37787045-37787095	HNPCEpiC	eye:	n/a
26	chr6:37788171-37788221	HL-60	blood:	n/a
27	chr6:37788171-37788221	Caco-2	colon:	n/a
28	chr6:37788171-37788221	NH-A	brain:	n/a
29	chr6:37787739-37787789	HRCEpiC	kidney:	n/a
30	chr6:37787209-37787259	AoSMC	blood vessel:	n/a
31	chr6:37788171-37788221	NB4	blood:	n/a
32	chr6:37787209-37787259	BE2_C	brain:	n/a
33	chr6:37787739-37787789	LNCaP	prostate:	n/a
34	chr6:37787052-37787102	MCF-7	breast:	n/a
35	chr6:37787165-37787215	T-47D	breast:	n/a
36	chr6:37787045-37787095	HCT-116	colon:	n/a
37	chr6:37788018-37788068	U87	brain:	n/a
38	chr6:37788018-37788068	NB4	blood:	n/a
39	chr6:37788018-37788068	AG10803	skin:	n/a
40	chr6:37787209-37787259	BJ	skin:	n/a
41	chr6:37788018-37788068	ECC-1	luminal epithelium:	n/a
42	chr6:37787739-37787789	HEK293	kidney:	embryo
43	chr6:37787739-37787789	HRE	kidney:	n/a
44	chr6:37787165-37787215	Jurkat	blood:	n/a
45	chr6:37787052-37787102	T-47D	breast:	n/a
46	chr6:37787209-37787259	Caco-2	colon:	n/a
47	chr6:37788171-37788221	HCF	heart:	n/a
48	chr6:37787052-37787102	GM19239	blood:	n/a
49	chr6:37787045-37787095	PFSK-1	brain:	n/a
50	chr6:37787165-37787215	NT2-D1	testis:	n/a

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37788598..37791926-chr6:37799655..37801709,3	K562	blood:
2	chr6:3000100..3000642-chr6:37786474..37787182,2	NB4	blood:
3	chr6:37787991..37789516-chr6:37789518..37791025,2	MCF-7	breast:
4	chr6:37787460..37788198-chr7:2559148..2559754,2	HCT-116	colon:
5	chr11:101981348..101981850-chr6:37786295..37786967,2	Hela-S3	cervix:
6	chr6:37788588..37790791-chr6:37827723..37829422,2	MCF-7	breast:
7	chr6:37759272..37760030-chr6:37786003..37786959,2	K562	blood:
8	chr3:64084830..64086992-chr6:37787357..37789363,2	MCF-7	breast:
9	chr17:56708595..56709357-chr6:37786295..37786946,2	Hela-S3	cervix:
10	chr6:37786462..37787543-chr7:25164251..25165338,4	Hela-S3	cervix:
11	chr6:37788608..37792008-chr6:37826692..37829268,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MDGA1-1	chr6:37786922-37786994	ENSG00000225945.1

No data

Variant related genes	Relation type
ZFAND3	TF binding region
ENSG00000225945	TF binding region
ZFAND3	CpG island
ENSG00000225945	CpG island
ENSG00000172115	chromatin interactions
ENSG00000137693	chromatin interactions
ENSG00000243313	chromatin interactions
ENSG00000241572	chromatin interactions
ENSG00000124588	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000106003	chromatin interactions

Extended variants
information (count: 94 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:94 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs560514119	chr6:37786927-37786928	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
2	rs574384550	chr6:37786970-37786971	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
3	rs142163484	chr6:37786975-37786976	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
4	rs563057668	chr6:37786988-37786989	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
5	rs531831976	chr6:37786995-37786996	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs547187497	chr6:37786996-37786997	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs544248998	chr6:37787002-37787003	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs181500095	chr6:37787022-37787023	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs60672298	chr6:37787026-37787027	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs80261662	chr6:37787030-37787031	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs112195188	chr6:37787053-37787054	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs566155477	chr6:37787067-37787068	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs529133774	chr6:37787068-37787069	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs186982138	chr6:37787072-37787073	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs576141238	chr6:37787082-37787083	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
16	rs553764317	chr6:37787173-37787174	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs371992760	chr6:37787174-37787175	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs567228309	chr6:37787232-37787233	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs536088773	chr6:37787284-37787285	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs73730817	chr6:37787288-37787289	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs537650413	chr6:37787308-37787309	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs558194187	chr6:37787311-37787312	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs554684296	chr6:37787356-37787357	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs571641955	chr6:37787375-37787376	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
25	rs568208370	chr6:37787399-37787400	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
26	rs534351103	chr6:37787408-37787409	Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
27	rs374874688	chr6:37787420-37787421	Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs151198619	chr6:37787433-37787434	Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs140377502	chr6:37787450-37787451	Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs542378164	chr6:37787457-37787458	Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs556899782	chr6:37787463-37787464	Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
32	rs573668592	chr6:37787476-37787477	Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
33	rs576538329	chr6:37787479-37787480	Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
34	rs371172618	chr6:37787530-37787531	Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
35	rs11544071	chr6:37787585-37787586	Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs191064172	chr6:37787602-37787603	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs182727321	chr6:37787623-37787624	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs532864475	chr6:37787628-37787629	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs539970158	chr6:37787640-37787641	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs535914302	chr6:37787811-37787812	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs111579710	chr6:37787821-37787822	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs185826547	chr6:37787822-37787823	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs556928213	chr6:37787906-37787907	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs548821142	chr6:37787978-37787979	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs77714510	chr6:37788004-37788005	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs115773136	chr6:37788048-37788049	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs551284222	chr6:37788057-37788058	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs571449537	chr6:37788066-37788067	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs369480982	chr6:37788069-37788070	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs554324023	chr6:37788088-37788089	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Lung cancer	19153074	CNVD
Ovarian cancer	21720365	CNVD
Melanoma	21693616	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	21062444	CNVD
Breast cancer	16397240	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Osteosarcoma	21197465	CNVD
Gastric cancer	24379144	CNVD
Neuroblastoma	18923191	CNVD
abnormal development	18461090	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:318 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37784800-37789000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:37785400-37789200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:37785800-37788400	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:37785800-37788400	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr6:37785800-37788600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:37785800-37788600	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:37785800-37788600	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:37785800-37788600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:37785800-37788600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:37785800-37788800	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:37785800-37788800	Active TSS	H1 Cell Line	embryonic stem cell
12	chr6:37785800-37788800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:37785800-37788800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:37785800-37788800	Active TSS	A549	lung
15	chr6:37785800-37789000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:37785800-37789200	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr6:37786000-37787000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:37786000-37788200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:37786000-37788400	Bivalent/Poised TSS	HepG2	liver
20	chr6:37786000-37788600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:37786000-37788600	Active TSS	NHDF-Ad	bronchial
22	chr6:37786000-37788800	Active TSS	H9 Cell Line	embryonic stem cell
23	chr6:37786000-37788800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:37786000-37788800	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:37786000-37788800	Active TSS	Fetal Muscle Trunk	muscle
26	chr6:37786000-37789000	Active TSS	Stomach Smooth Muscle	stomach
27	chr6:37786000-37789200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:37786000-37789200	Active TSS	Fetal Intestine Large	intestine
29	chr6:37786000-37789200	Active TSS	Right Ventricle	heart
30	chr6:37786000-37789200	Active TSS	GM12878-XiMat	blood
31	chr6:37786000-37789800	Active TSS	Psoas Muscle	Psoas
32	chr6:37786000-37790000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:37786200-37787400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:37786200-37788400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:37786200-37788400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:37786200-37788400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:37786200-37788400	Active TSS	Small Intestine	intestine
38	chr6:37786200-37788600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:37786200-37788600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:37786200-37788600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:37786200-37788600	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr6:37786200-37788800	Active TSS	Colonic Mucosa	Colon
43	chr6:37786200-37788800	Active TSS	Esophagus	oesophagus
44	chr6:37786200-37788800	Active TSS	Left Ventricle	heart
45	chr6:37786200-37788800	Active TSS	Ovary	ovary
46	chr6:37786200-37788800	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr6:37786200-37789000	Active TSS	Aorta	Aorta
48	chr6:37786200-37789200	Active TSS	Pancreas	Pancrea
49	chr6:37786400-37787200	Active TSS	Fetal Heart	heart
50	chr6:37786400-37788200	Active TSS	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links