Variant report

Variant	esv3353886
Chromosome Location	chr19:37220161-37248967
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:37248355..37251214-chr19:37254727..37257634,2	K562	blood:
2	chr19:37230647..37232496-chr19:37235313..37237662,2	K562	blood:
3	chr19:37237446..37239729-chr19:37240708..37243569,2	K562	blood:
4	chr19:37237446..37239729-chr19:37240708..37243569,2	K562	blood:
5	chr19:37230647..37232496-chr19:37235313..37237662,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF567-4	chr19:37220300-37220609	ucscGeneNc_uc002ntb_1
2	lnc-ZNF567-4	chr19:37223112-37223145	ucscGeneNc_uc002ntb_1
3	lnc-ZNF567-4	chr19:37222239-37222365	ucscGeneNc_uc002ntb_1

No data

Extended variants
information (count: 921 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:921 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs376384007	chr19:37220201-37220202	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs572115364	chr19:37220215-37220216	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs141651235	chr19:37220249-37220250	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs78458178	chr19:37220274-37220275	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs141004809	chr19:37220350-37220351	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs77509569	chr19:37220436-37220437	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs543722310	chr19:37220604-37220605	ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs565191677	chr19:37220767-37220768	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs532178204	chr19:37220822-37220823	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs541226519	chr19:37220839-37220840	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs183566773	chr19:37220852-37220853	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs530205254	chr19:37220880-37220881	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs548443927	chr19:37220923-37220924	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs187191457	chr19:37220932-37220933	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs530847411	chr19:37220940-37220941	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs552420938	chr19:37220956-37220957	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs549611022	chr19:37220965-37220966	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570832141	chr19:37220973-37220974	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs555008107	chr19:37220989-37220990	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs192125466	chr19:37221045-37221046	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182733429	chr19:37221100-37221101	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs573101569	chr19:37221123-37221124	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs58469674	chr19:37221132-37221133	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201564849	chr19:37221133-37221134	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs568607650	chr19:37221134-37221135	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs536322708	chr19:37221157-37221158	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs149862127	chr19:37221160-37221161	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs12979838	chr19:37221188-37221189	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs12985821	chr19:37221203-37221204	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs117317465	chr19:37221270-37221271	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs537063679	chr19:37221284-37221285	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs144675749	chr19:37221361-37221362	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs148495037	chr19:37221394-37221395	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs186788852	chr19:37221405-37221406	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs12972952	chr19:37221408-37221409	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs191866483	chr19:37221432-37221433	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs182613407	chr19:37221457-37221458	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs541904465	chr19:37221535-37221536	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs374144608	chr19:37221562-37221563	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs187039889	chr19:37221590-37221591	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs572042119	chr19:37221644-37221645	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs377043241	chr19:37221656-37221657	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs563459097	chr19:37221676-37221677	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs530786878	chr19:37221678-37221679	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs146565510	chr19:37221720-37221721	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs57657771	chr19:37221735-37221736	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs192945938	chr19:37221765-37221766	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs564178409	chr19:37221777-37221778	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs528779073	chr19:37221794-37221795	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs142805304	chr19:37221798-37221799	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD

Chromatin state (count:593 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37194000-37254000	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:37194400-37221400	ZNF genes & repeats	Dnd41	blood
3	chr19:37194400-37253800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:37194600-37220800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr19:37194600-37227000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr19:37194600-37258800	ZNF genes & repeats	Liver	Liver
7	chr19:37197000-37226400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr19:37216200-37220800	ZNF genes & repeats	Brain Anterior Caudate	brain
9	chr19:37216200-37221000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:37216200-37222000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
11	chr19:37216200-37226600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
12	chr19:37216200-37228600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
13	chr19:37216400-37221000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
14	chr19:37216400-37221400	ZNF genes & repeats	Brain Hippocampus Middle	brain
15	chr19:37216800-37225200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
16	chr19:37216800-37232400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr19:37217000-37220800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
18	chr19:37217000-37220800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr19:37217200-37220800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr19:37217200-37221400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
21	chr19:37217200-37221400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
22	chr19:37217200-37221400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr19:37217200-37229000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr19:37217400-37223800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
25	chr19:37217600-37220400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr19:37217800-37220200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr19:37217800-37220400	Weak transcription	HSMM	muscle
28	chr19:37218000-37220800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr19:37218000-37221000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
30	chr19:37218000-37221400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
31	chr19:37218200-37220800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr19:37218200-37221200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr19:37218400-37220200	Weak transcription	Fetal Kidney	kidney
34	chr19:37218600-37220200	Strong transcription	Brain Angular Gyrus	brain
35	chr19:37218600-37220400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
36	chr19:37218600-37220800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
37	chr19:37218800-37220600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr19:37218800-37220800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
39	chr19:37218800-37221400	ZNF genes & repeats	Fetal Lung	lung
40	chr19:37218800-37224600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr19:37219000-37220400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr19:37219000-37220400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr19:37219000-37220400	Weak transcription	Aorta	Aorta
44	chr19:37219000-37220400	Weak transcription	Esophagus	oesophagus
45	chr19:37219000-37220400	Weak transcription	Gastric	stomach
46	chr19:37219000-37220400	Weak transcription	Left Ventricle	heart
47	chr19:37219000-37220400	Weak transcription	Ovary	ovary
48	chr19:37219000-37220400	Weak transcription	Pancreas	Pancrea
49	chr19:37219000-37220600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr19:37219000-37220600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links