Variant report
| Variant | esv3354131 |
|---|---|
| Chromosome Location | chr11:106688582-106689147 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs533566580 | chr11:106688608-106688609 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs1120250 | chr11:106688695-106688696 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs550928940 | chr11:106688749-106688750 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs150136157 | chr11:106688788-106688789 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs527558851 | chr11:106688799-106688800 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs185817434 | chr11:106688800-106688801 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs528836649 | chr11:106688881-106688882 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs567444543 | chr11:106688896-106688897 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs1574952 | chr11:106688918-106688919 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 10 | rs138597184 | chr11:106688937-106688938 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs148891150 | chr11:106688969-106688970 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs539047900 | chr11:106688971-106688972 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs554188976 | chr11:106689025-106689026 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs567371110 | chr11:106689028-106689029 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs186688882 | chr11:106689048-106689049 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs143608481 | chr11:106689070-106689071 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs7950351 | chr11:106689100-106689101 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 18 | rs576583066 | chr11:106689103-106689104 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs200414911 | chr11:106689129-106689130 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs34795093 | chr11:106689130-106689131 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs11211932 | chr11:106689131-106689132 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 22 | rs577303976 | chr11:106689133-106689134 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs551143756 | chr11:106689136-106689137 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:89)
| Disease | PMID | Source |
|---|---|---|
| Medulloblastoma | 21979893 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Autism | 22495311 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Cancer | 21637783 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Chronic lymphocytic leukemia | 21795749 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Neuroblastoma | 21484798 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 20837533 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Cervical cancer | 21063398 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Neuroblastoma | 18923524 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Multiple myeloma | 17077331 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Cancer | 16751803 | CNVD |
| Seminomas | 18059402 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Cancer | 22429812 | CNVD |
| Breast cancer | 16608533 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Melanoma | 18172304 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Hepatocellular carcinoma | 16785998 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Breast cancer | 21958427 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Renal cell carcinoma | 18194544 | CNVD |
| Breast cancer | 17133270 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Breast cancer | 17603634 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Basal cell lymphoma | 16790693 | CNVD |
| Chronic lymphocytic leukemia | 21670202 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Ovarian clear cell carcinoma | 19293255 | CNVD |
| Mental retardation | 19966786 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Follicular lymphoma | 17170743 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Chronic lymphocytic leukemia | 17805327 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Chronic lymphocytic leukemia | 18922857 | CNVD |
| Neuroblastoma | 17327916 | CNVD |
| Esophageal adenocarcinoma | 18519675 | CNVD |
| Esophageal squamous carcinoma | 17470683 | CNVD |
| Mantle cell lymphoma | 19029149 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Malignant melanoma | 17260012 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Obesity | 19966786 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106679200-106692200 | Weak transcription | Ovary | ovary |
| 2 | chr11:106688000-106689600 | Enhancers | Fetal Heart | heart |
