Variant report
Variant | esv3354237 |
---|---|
Chromosome Location | chr4:26317604-26318952 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No data |
(count:3 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
RBPJ | TF binding region |
ENSG00000168214 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs574857963 | chr4:26317611-26317612 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs191382777 | chr4:26317620-26317621 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs141148549 | chr4:26317636-26317637 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs183685487 | chr4:26317639-26317640 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
5 | rs568559241 | chr4:26317693-26317694 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs534553827 | chr4:26317748-26317749 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs150729337 | chr4:26317823-26317824 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs577197014 | chr4:26317837-26317838 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs189185120 | chr4:26317843-26317844 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs556105513 | chr4:26317863-26317864 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs561619110 | chr4:26317868-26317869 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs201168345 | chr4:26317869-26317870 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs113711773 | chr4:26317879-26317880 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs576139077 | chr4:26317890-26317891 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs201379574 | chr4:26317919-26317920 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs368350038 | chr4:26317971-26317972 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs138511820 | chr4:26317972-26317973 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs141155882 | chr4:26317973-26317974 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs150311464 | chr4:26317974-26317975 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs372696852 | chr4:26317986-26317987 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs541873533 | chr4:26317992-26317993 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs571044201 | chr4:26317999-26318000 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs200897166 | chr4:26318025-26318026 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs561182613 | chr4:26318044-26318045 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs536771568 | chr4:26318051-26318052 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs199893241 | chr4:26318055-26318056 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs144124596 | chr4:26318090-26318091 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs375937605 | chr4:26318092-26318093 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs148250702 | chr4:26318104-26318105 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs111216329 | chr4:26318112-26318113 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs202094534 | chr4:26318113-26318114 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs376824658 | chr4:26318122-26318123 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs540461406 | chr4:26318124-26318125 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs368989004 | chr4:26318125-26318126 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs371659872 | chr4:26318132-26318133 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs375726909 | chr4:26318133-26318134 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs56377206 | chr4:26318140-26318141 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs550127028 | chr4:26318143-26318144 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs199525594 | chr4:26318145-26318146 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs35005480 | chr4:26318155-26318156 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs55634766 | chr4:26318156-26318157 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs12171359 | chr4:26318157-26318158 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs12171452 | chr4:26318169-26318170 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs369116860 | chr4:26318185-26318186 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs71184302 | chr4:26318186-26318187 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs12171360 | chr4:26318187-26318188 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs201757341 | chr4:26318217-26318218 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs200472663 | chr4:26318218-26318219 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs192530421 | chr4:26318221-26318222 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs536110250 | chr4:26318257-26318258 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Chronic lymphocytic leukemia | 21546498 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Neuroblastoma | 17533364 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Cancer | 21637783 | CNVD |
Melanoma | 21693616 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Cervical cancer | 21062161 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Neuroblastoma | 18923191 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 21785460 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Lung cancer | 18438408 | CNVD |
Wilms tumour | 21544195 | CNVD |
Breast cancer | 21858162 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Cancer | 21183584 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Gastric cancer | 21586687 | CNVD |
Breast cancer | 17133270 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Melanoma | 22183965 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Prostate cancer | 18632612 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Burkitt''s lymphoma | 20823134 | CNVD |
Cancer | 22183965 | CNVD |
Gastric cancer | 16891809 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Melanoma | 18172304 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:26301600-26320600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
2 | chr4:26309600-26320600 | Weak transcription | Colon Smooth Muscle | Colon |
3 | chr4:26316600-26320400 | Weak transcription | H1 Cell Line | embryonic stem cell |
4 | chr4:26317400-26319600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
5 | chr4:26318000-26319000 | Weak transcription | NHLF | lung |