Variant report

Variant	esv3354712
Chromosome Location	chr5:88606046-88607944
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:88585073..88587618-chr5:88605196..88607687,2	K562	blood:

Extended variants
information (count: 113 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:113 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs148806674	chr5:88606051-88606052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs545123235	chr5:88606079-88606080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs185751149	chr5:88606101-88606102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs2250032	chr5:88606108-88606109	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs556692772	chr5:88606111-88606112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs570435611	chr5:88606169-88606170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs112866403	chr5:88606210-88606211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs10473921	chr5:88606229-88606230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189673831	chr5:88606232-88606233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs573186357	chr5:88606259-88606260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs545637727	chr5:88606260-88606261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs373069800	chr5:88606261-88606262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs58124283	chr5:88606271-88606272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs200369237	chr5:88606284-88606285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs3095909	chr5:88606285-88606286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs531363832	chr5:88606297-88606298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs112291597	chr5:88606298-88606299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs561805865	chr5:88606302-88606303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs3095910	chr5:88606321-88606322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs547067901	chr5:88606333-88606334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs533062660	chr5:88606338-88606339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs57204143	chr5:88606342-88606343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs571070347	chr5:88606351-88606352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs62378219	chr5:88606357-88606358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs60070021	chr5:88606379-88606380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs556922263	chr5:88606387-88606388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs62638612	chr5:88606393-88606394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs59680428	chr5:88606415-88606416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535886179	chr5:88606423-88606424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs555621357	chr5:88606425-88606426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs28801172	chr5:88606429-88606430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs572359917	chr5:88606459-88606460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs575652583	chr5:88606461-88606462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs28809600	chr5:88606465-88606466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs28817942	chr5:88606476-88606477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs557796421	chr5:88606495-88606496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs544822014	chr5:88606497-88606498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs543191431	chr5:88606531-88606532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs529170624	chr5:88606536-88606537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs201297926	chr5:88606595-88606596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs28788261	chr5:88606609-88606610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs57257154	chr5:88606623-88606624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs202071548	chr5:88606631-88606632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs111217631	chr5:88606640-88606641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs61109436	chr5:88606645-88606646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs186831220	chr5:88606660-88606661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs61728741	chr5:88606667-88606668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs373356439	chr5:88606681-88606682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs148584758	chr5:88606696-88606697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs192065839	chr5:88606709-88606710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Prostate cancer	21965145	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ovarian cancer	21720365	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Testicular cancer	18059402	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	19592390	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Mental retardation	19471318	CNVD
Colorectal cancer	16774939	CNVD
Renal cell carcinoma	18194544	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:88599600-88608200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:88599600-88609600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr5:88604800-88609000	Weak transcription	K562	blood
4	chr5:88605000-88608800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:88605000-88608800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:88605000-88609600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:88605200-88609400	Weak transcription	Primary B cells from cord blood	blood
8	chr5:88605400-88607800	Weak transcription	GM12878-XiMat	blood
9	chr5:88605400-88608400	Weak transcription	HMEC	breast
10	chr5:88607800-88608800	Enhancers	GM12878-XiMat	blood

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