Variant report

Variant	esv3355261
Chromosome Location	chr6:160606262-160610460
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 179 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:179 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs188430397	chr6:160606341-160606342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs562623317	chr6:160606347-160606348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs576406781	chr6:160606357-160606358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs371150120	chr6:160606362-160606363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs542198859	chr6:160606371-160606372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs561894613	chr6:160606394-160606395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs191742639	chr6:160606401-160606402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs548074453	chr6:160606424-160606425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs575114737	chr6:160606442-160606443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs184279358	chr6:160606452-160606453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs533543284	chr6:160606473-160606474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs549027572	chr6:160606487-160606488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs140793115	chr6:160606525-160606526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs568921422	chr6:160606541-160606542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs537501733	chr6:160606555-160606556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs548169585	chr6:160606578-160606579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs567937110	chr6:160606581-160606582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs146733492	chr6:160606591-160606592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs374707903	chr6:160606648-160606649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs377465268	chr6:160606654-160606655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs576654988	chr6:160606729-160606730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs372342441	chr6:160606733-160606734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs377010915	chr6:160606761-160606762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs1086569	chr6:160606766-160606767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539249030	chr6:160606826-160606827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs556425799	chr6:160606870-160606871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs576493178	chr6:160606901-160606902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs369492593	chr6:160606941-160606942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs372741541	chr6:160606947-160606948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs552244852	chr6:160606965-160606966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs376983912	chr6:160606969-160606970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs182079749	chr6:160606976-160606977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs78826799	chr6:160606978-160606979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs375651692	chr6:160606991-160606992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs572453781	chr6:160606993-160606994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs541772150	chr6:160607077-160607078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs564764571	chr6:160607079-160607080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs141853057	chr6:160607092-160607093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs71565765	chr6:160607096-160607097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs563683910	chr6:160607107-160607108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs531455462	chr6:160607158-160607159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs149330127	chr6:160607200-160607201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs149566029	chr6:160607204-160607205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs533523020	chr6:160607208-160607209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs547334190	chr6:160607209-160607210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs187631666	chr6:160607236-160607237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs567890653	chr6:160607281-160607282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs143274496	chr6:160607290-160607291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs556329113	chr6:160607291-160607292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576130489	chr6:160607320-160607321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17850661	CNVD
Renal cell carcinoma	18765545	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Breast cancer	20556506	CNVD
Hirschsprung''s Disease	21712996	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Developmental delay	19459884	CNVD
Hearing loss	19459884	CNVD
Microcephaly	19459884	CNVD
Coronary artery disease	17160897	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Multiple myeloma	17550852	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160591400-160612400	Weak transcription	Pancreas	Pancrea
2	chr6:160609800-160610000	ZNF genes & repeats	Aorta	Aorta
3	chr6:160609800-160610200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:160609800-160610400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:160609800-160610400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:160610000-160623600	Weak transcription	Aorta	Aorta
7	chr6:160610200-160612600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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