Variant report

Variant	esv3355850
Chromosome Location	chr10:762152-766350
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:756021..758273-chr10:765053..767183,2	MCF-7	breast:
2	chr10:762176..765127-chr10:765238..767512,2	MCF-7	breast:
3	chr10:762176..765127-chr10:765238..767512,2	MCF-7	breast:
4	chr10:734350..736432-chr10:761399..763324,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151240	chromatin interactions

Extended variants
information (count: 248 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:248 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559779122	chr10:762154-762155	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs371335386	chr10:762155-762156	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs544969884	chr10:762216-762217	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs558933205	chr10:762221-762222	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs577837936	chr10:762240-762241	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs543735721	chr10:762272-762273	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs11599917	chr10:762288-762289	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs565373328	chr10:762314-762315	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs75593516	chr10:762318-762319	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs542851738	chr10:762319-762320	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs142544701	chr10:762324-762325	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs570107805	chr10:762350-762351	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs551065373	chr10:762358-762359	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs563205212	chr10:762381-762382	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs571423679	chr10:762398-762399	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs531100219	chr10:762399-762400	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs537355462	chr10:762410-762411	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs181750779	chr10:762411-762412	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs536409620	chr10:762412-762413	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs185130163	chr10:762443-762444	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs189977846	chr10:762475-762476	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs538776874	chr10:762492-762493	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs181197025	chr10:762521-762522	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs150959589	chr10:762539-762540	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs377720245	chr10:762599-762600	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs557178659	chr10:762615-762616	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs573999954	chr10:762644-762645	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs58502657	chr10:762654-762655	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs140803383	chr10:762655-762656	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs572956350	chr10:762673-762674	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs545127466	chr10:762711-762712	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs816313	chr10:762725-762726	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs189765753	chr10:762730-762731	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs144404043	chr10:762740-762741	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs561215237	chr10:762760-762761	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs371140090	chr10:762772-762773	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs546768159	chr10:762773-762774	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs566758309	chr10:762822-762823	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs180695339	chr10:762871-762872	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs816314	chr10:762872-762873	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs552687379	chr10:762886-762887	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs569260956	chr10:762893-762894	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs538204363	chr10:762914-762915	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs554687683	chr10:762950-762951	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs186256826	chr10:762953-762954	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs533835057	chr10:762955-762956	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs536581603	chr10:762971-762972	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs553963446	chr10:762979-762980	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs553191858	chr10:763011-763012	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs535963946	chr10:763026-763027	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:761000-768200	Weak transcription	Placenta	Placenta
2	chr10:761000-768400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:762800-763200	Enhancers	Fetal Heart	heart
4	chr10:764200-764400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
5	chr10:764200-764600	Bivalent Enhancer	HepG2	liver
6	chr10:764800-772000	Weak transcription	Right Atrium	heart

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