Variant report

Variant	esv3355893
Chromosome Location	chr10:42605446-42609894
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 524 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:524 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201329483	chr10:42605449-42605450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs537853267	chr10:42605450-42605451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs76563419	chr10:42605456-42605457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs74900826	chr10:42605457-42605458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs376046943	chr10:42605461-42605462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs200791588	chr10:42605465-42605466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs373687913	chr10:42605466-42605467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs61845469	chr10:42605489-42605490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs79750497	chr10:42605496-42605497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs577478570	chr10:42605497-42605498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs546062261	chr10:42605508-42605509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112371994	chr10:42605518-42605519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs76845010	chr10:42605530-42605531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs559922597	chr10:42605550-42605551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs186030609	chr10:42605558-42605559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs188742373	chr10:42605569-42605570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201314420	chr10:42605578-42605579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs9665333	chr10:42605591-42605592	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
19	rs530766476	chr10:42605604-42605605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs550974867	chr10:42605619-42605620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs144242176	chr10:42605623-42605624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs74831251	chr10:42605638-42605639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs538241935	chr10:42605642-42605643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs75012131	chr10:42605650-42605651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546456775	chr10:42605659-42605660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs78984430	chr10:42605677-42605678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs146539667	chr10:42605691-42605692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs78683637	chr10:42605702-42605703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs566721699	chr10:42605712-42605713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs549060427	chr10:42605722-42605723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs201090719	chr10:42605733-42605734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs368515674	chr10:42605736-42605737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs71529063	chr10:42605750-42605751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs561982858	chr10:42605751-42605752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs566230771	chr10:42605752-42605753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs71014224	chr10:42605754-42605755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs398013266	chr10:42605760-42605761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs368687565	chr10:42605775-42605776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs568979541	chr10:42605787-42605788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs202144681	chr10:42605796-42605797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs537815836	chr10:42605805-42605806	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs79612555	chr10:42605806-42605807	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs370077348	chr10:42605816-42605817	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs113325071	chr10:42605817-42605818	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs373967878	chr10:42605827-42605828	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs368436990	chr10:42605832-42605833	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs571033542	chr10:42605838-42605839	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs372188254	chr10:42605839-42605840	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs112079615	chr10:42605842-42605843	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs540170900	chr10:42605852-42605853	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Autism	20531469	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42600200-42606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:42602200-42605800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:42605800-42608800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr10:42606400-42607800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:42606400-42608800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr10:42606400-42608800	ZNF genes & repeats	Fetal Stomach	stomach
7	chr10:42606400-42609000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:42606600-42608400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr10:42606800-42608400	ZNF genes & repeats	Placenta	Placenta

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