Variant report

Variant	esv3356560
Chromosome Location	chr2:57279948-57285146
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr2:57281573-57281844	HepG2	liver:	n/a	chr2:57281722-57281733
2	CEBPB	chr2:57281660-57281670	K562	blood:	n/a	n/a
3	MAFK	chr2:57280140-57280340	HepG2	liver:	n/a	n/a
4	POLR2A	chr2:57281646-57281654	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr2:57281553-57281690	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr2:57281737-57281848	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr2:57283335-57283595	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:57271966..57274864-chr2:57279290..57282251,2	K562	blood:

Variant related genes	Relation type
ENSG00000271115	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11684621	chr2:57280153-57280154	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs575407235	chr2:57280161-57280162	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs141977239	chr2:57280180-57280181	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs557809662	chr2:57280194-57280195	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs188046347	chr2:57280233-57280234	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs147299580	chr2:57280250-57280251	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs559788608	chr2:57280254-57280255	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs192531410	chr2:57280264-57280265	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs71416467	chr2:57280297-57280298	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs13420923	chr2:57280322-57280323	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs374681402	chr2:57280332-57280333	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs562149910	chr2:57280340-57280341	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Breast cancer	17603634	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	22495311	CNVD
Autism	18522746	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Williams Syndrome	20824207	CNVD
Breast cancer	16272173	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Retinoblastoma	22278416	CNVD
Cancer	21183584	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	17053054	CNVD
Hereditary non-polyposis colorectal cancer	19566914	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
Mental retardation	19951919	CNVD
Myelofibrosis	22110671	CNVD
Microcephaly	20799320	CNVD
camptodactyly	20799320	CNVD
cognitive delay	20799320	CNVD
prenatal and postnatal growth deficiency	20799320	CNVD
ptosis of eyelids	20799320	CNVD
Maculopathy	20981449	CNVD
2p16.1 microdeletion syndrome	22283845	CNVD
Autism	22579565	CNVD
Autism	16963482	CNVD
Autism	21750575	CNVD
idiopathic intellectual disability	16963482	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Multiple myeloma	16616336	CNVD
Follicular lymphoma	17699855	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Seminomas	18059402	CNVD
Testicular germ cell tumor	18059402	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links