Variant report
| Variant | esv3356869 |
|---|---|
| Chromosome Location | chr11:26061196-26061562 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:26060352..26062895-chr11:26083978..26086894,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs142371559 | chr11:26061206-26061207 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs559015524 | chr11:26061229-26061230 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs4353231 | chr11:26061235-26061236 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs564104385 | chr11:26061251-26061252 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs528597091 | chr11:26061295-26061296 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs540672827 | chr11:26061305-26061306 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs558873833 | chr11:26061307-26061308 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs538841060 | chr11:26061356-26061357 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs562155258 | chr11:26061408-26061409 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs573671944 | chr11:26061428-26061429 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs192544869 | chr11:26061429-26061430 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs2130234 | chr11:26061440-26061441 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 13 | rs563156488 | chr11:26061466-26061467 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs115956012 | chr11:26061500-26061501 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs552219629 | chr11:26061513-26061514 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs12289310 | chr11:26061524-26061525 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 17 | rs571912822 | chr11:26061533-26061534 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs534423952 | chr11:26061544-26061545 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs546665568 | chr11:26061554-26061555 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs568211345 | chr11:26061560-26061561 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:52)
| Disease | PMID | Source |
|---|---|---|
| Burkitt''s lymphoma | 19759907 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Melanoma | 18172304 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Parathyroid adenoma | 22454399 | CNVD |
| Chordoma | 21602918 | CNVD |
| Breast cancer | 21949216 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 19222835 | CNVD |
| T-cell acute lymphoblastic leukemia | 20065082 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Beckwith-Wiedemann syndrome | 21518781 | CNVD |
| Wilms tumour | 21518781 | CNVD |
| Hepatoblastoma | 21518781 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Autism | 22495311 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Non-small cell lung cancer | 21385341 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Breast cancer | 21785460 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Congenital diaphragmatic hernia | 21525063 | CNVD |
| Renal cell carcinoma | 18194544 | CNVD |
| Potocki-Shaffer syndrome | 19222835 | CNVD |
| WAGR syndrome | 19222835 | CNVD |
| Chordoma | 18071362 | CNVD |
| Autism | 22102821 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Breast cancer | 21364760 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Bipolar disorder | 19114987 | CNVD |
| Schizophrenia | 23813976 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26060800-26065400 | Weak transcription | GM12878-XiMat | blood |
