Variant report

Variant	esv3357659
Chromosome Location	chr10:42396477-42396664
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138040254	chr10:42396482-42396483	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
2	rs549885493	chr10:42396485-42396486	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
3	rs142591265	chr10:42396486-42396487	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
4	rs150558303	chr10:42396488-42396489	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
5	rs28878307	chr10:42396489-42396490	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
6	rs149323541	chr10:42396491-42396492	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
7	rs144444846	chr10:42396494-42396495	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
8	rs139413806	chr10:42396496-42396497	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
9	rs145150256	chr10:42396499-42396500	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
10	rs12770138	chr10:42396501-42396502	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
11	rs569642534	chr10:42396505-42396506	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
12	rs112652073	chr10:42396507-42396508	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
13	rs61847567	chr10:42396511-42396512	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
14	rs200715303	chr10:42396519-42396520	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
15	rs61847568	chr10:42396522-42396523	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
16	rs111631366	chr10:42396525-42396526	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
17	rs538480139	chr10:42396527-42396528	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
18	rs199639930	chr10:42396528-42396529	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
19	rs61847569	chr10:42396533-42396534	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
20	rs151297382	chr10:42396534-42396535	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
21	rs140649161	chr10:42396535-42396536	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
22	rs375132628	chr10:42396536-42396537	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
23	rs113431258	chr10:42396537-42396538	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
24	rs61847570	chr10:42396541-42396542	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
25	rs369310253	chr10:42396546-42396547	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
26	rs371614032	chr10:42396547-42396548	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
27	rs61847582	chr10:42396548-42396549	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
28	rs200412638	chr10:42396550-42396551	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
29	rs201623925	chr10:42396551-42396552	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
30	rs12777977	chr10:42396561-42396562	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
31	rs578187187	chr10:42396563-42396564	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
32	rs61847583	chr10:42396566-42396567	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
33	rs201900100	chr10:42396574-42396575	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
34	rs12777988	chr10:42396581-42396582	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
35	rs146549467	chr10:42396587-42396588	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
36	rs111803397	chr10:42396592-42396593	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
37	rs534513985	chr10:42396594-42396595	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
38	rs554477326	chr10:42396596-42396597	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
39	rs141181811	chr10:42396601-42396602	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
40	rs145066082	chr10:42396602-42396603	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
41	rs138897971	chr10:42396614-42396615	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
42	rs140606200	chr10:42396619-42396620	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
43	rs143157343	chr10:42396625-42396626	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
44	rs74220966	chr10:42396629-42396630	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
45	rs148234621	chr10:42396632-42396633	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
46	rs141360910	chr10:42396633-42396634	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
47	rs74202609	chr10:42396636-42396637	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
48	rs137932774	chr10:42396637-42396638	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
49	rs143444435	chr10:42396639-42396640	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
50	rs542638661	chr10:42396643-42396644	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
2	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
3	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
4	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
5	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
7	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
14	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
15	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
19	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
20	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
22	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
24	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
25	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
27	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
28	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
29	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
30	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
31	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
32	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
34	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
35	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
36	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
37	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
38	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
39	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
40	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
41	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
42	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
43	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
45	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
46	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
47	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
48	chr10:42373600-42402600	ZNF genes & repeats	Fetal Brain Male	brain
49	chr10:42373600-42402800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:42373600-42402800	ZNF genes & repeats	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links