Variant report

Variant	esv3358071
Chromosome Location	chr11:102352984-102353370
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102349024..102351373-chr11:102352689..102355274,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs187764439	chr11:102353002-102353003	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs634743	chr11:102353032-102353033	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs373256975	chr11:102353033-102353034	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs564120355	chr11:102353066-102353067	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs192391522	chr11:102353077-102353078	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs183911352	chr11:102353085-102353086	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs574455103	chr11:102353086-102353087	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs538656532	chr11:102353099-102353100	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs7111897	chr11:102353175-102353176	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs7127524	chr11:102353192-102353193	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs187795347	chr11:102353270-102353271	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs113109059	chr11:102353287-102353288	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs139940552	chr11:102353351-102353352	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs372817665	chr11:102353370-102353371	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Melanoma	22183965	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Multiple myeloma	16616336	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Intracranial ependymoma	16609018	CNVD
Colorectal cancer	16912164	CNVD
Ovarian cancer	21720365	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102341000-102359600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:102347000-102353000	Enhancers	Stomach Mucosa	stomach
3	chr11:102347800-102353000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:102348000-102353400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:102348800-102353400	Weak transcription	Hela-S3	cervix
6	chr11:102350200-102353400	Weak transcription	HepG2	liver
7	chr11:102352800-102353200	Weak transcription	Gastric	stomach
8	chr11:102353000-102353400	Weak transcription	Stomach Mucosa	stomach
9	chr11:102353000-102353600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:102353200-102353600	Enhancers	Gastric	stomach

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