Variant report

Variant	esv3358147
Chromosome Location	chr10:98964798-98965152
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569918638	chr10:98964859-98964860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs141783486	chr10:98964887-98964888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs183568797	chr10:98964898-98964899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs145495428	chr10:98964905-98964906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs145765911	chr10:98964908-98964909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs74490113	chr10:98964914-98964915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs567895965	chr10:98964933-98964934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs535223185	chr10:98964940-98964941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs187494741	chr10:98964952-98964953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs578255253	chr10:98964974-98964975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs539302867	chr10:98965023-98965024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs557768365	chr10:98965024-98965025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs145429543	chr10:98965087-98965088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs1147594	chr10:98965101-98965102	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Autosomal dominant partial epilepsy	18472482	CNVD
Breast cancer	16397240	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	22522925	CNVD
Ependymoma	20639864	CNVD
Lung adenocarcinoma	21935476	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98956600-98976000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:98961800-98967000	Weak transcription	Fetal Thymus	thymus
3	chr10:98962200-98966800	Weak transcription	GM12878-XiMat	blood

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