Variant report

Variant	esv3358175
Chromosome Location	chr2:35040473-35043021
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RASGRP3-5	chr2:35042159-35042319	XLOC_001426
2	lnc-RASGRP3-5	chr2:35041549-35041945	XLOC_001426

Extended variants
information (count: 280 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:280 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs578184332	chr2:35040543-35040544	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs540598102	chr2:35040547-35040548	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs560708363	chr2:35040579-35040580	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs573908906	chr2:35040618-35040619	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs542668259	chr2:35040678-35040679	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs17015662	chr2:35040679-35040680	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs75884060	chr2:35040718-35040719	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs17015668	chr2:35040726-35040727	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs565165418	chr2:35040734-35040735	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs527557880	chr2:35040775-35040776	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs547392984	chr2:35040780-35040781	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs567413997	chr2:35040789-35040790	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs536453934	chr2:35040834-35040835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs188098574	chr2:35040873-35040874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs376435077	chr2:35040878-35040879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs140178552	chr2:35040880-35040881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs538771851	chr2:35040901-35040902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs558502915	chr2:35040921-35040922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs570732079	chr2:35040924-35040925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs376286977	chr2:35040929-35040930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs28524538	chr2:35040936-35040937	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs137874765	chr2:35040937-35040938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113649939	chr2:35040947-35040948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201601279	chr2:35040948-35040949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs554175562	chr2:35040955-35040956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs573846824	chr2:35040956-35040957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs147502224	chr2:35040964-35040965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs200900483	chr2:35040974-35040975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201409841	chr2:35040978-35040979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs568669065	chr2:35040979-35040980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs143420067	chr2:35040982-35040983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs577006157	chr2:35040984-35040985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs562779835	chr2:35040995-35040996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs13408755	chr2:35041007-35041008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs199954322	chr2:35041009-35041010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs199532501	chr2:35041010-35041011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs114100678	chr2:35041011-35041012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs576108534	chr2:35041018-35041019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs147208234	chr2:35041020-35041021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs565252606	chr2:35041021-35041022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs527697824	chr2:35041022-35041023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs547623899	chr2:35041028-35041029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs561164855	chr2:35041031-35041032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs530058310	chr2:35041038-35041039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs549984334	chr2:35041040-35041041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs113994917	chr2:35041042-35041043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs538709229	chr2:35041049-35041050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs192885575	chr2:35041058-35041059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs565627645	chr2:35041062-35041063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs534323257	chr2:35041071-35041072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Bladder cancer	21909424	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	19521722	CNVD
Autism	18522746	CNVD
Breast cancer	21364760	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	18927303	CNVD
Hereditary gingival fibromatosis	19633868	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	16397240	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Neurocytoma	17123091	CNVD
Autism	22495309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:35029600-35046600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:35035000-35041200	Weak transcription	Pancreas	Pancrea
3	chr2:35040000-35040800	Enhancers	Stomach Mucosa	stomach
4	chr2:35040200-35040600	Enhancers	Liver	Liver
5	chr2:35040200-35040800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:35040800-35042400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:35041200-35041400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr2:35041200-35041400	Enhancers	Gastric	stomach
9	chr2:35041200-35041600	Enhancers	Pancreas	Pancrea
10	chr2:35041400-35044400	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links