Variant report

Variant	esv3358730
Chromosome Location	chr6:77737083-77739081
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:81 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs568113666	chr6:77737112-77737113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs535555636	chr6:77737192-77737193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs185169760	chr6:77737251-77737252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs572093684	chr6:77737272-77737273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs578133615	chr6:77737285-77737286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs530302049	chr6:77737323-77737324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs576739606	chr6:77737324-77737325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs557330110	chr6:77737332-77737333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs546806826	chr6:77737348-77737349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs577159257	chr6:77737368-77737369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs537579635	chr6:77737380-77737381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs190444424	chr6:77737415-77737416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs545592956	chr6:77737431-77737432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs563100162	chr6:77737441-77737442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs138746237	chr6:77737453-77737454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs60025008	chr6:77737467-77737468	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs375860591	chr6:77737557-77737558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs77697357	chr6:77737558-77737559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200495106	chr6:77737560-77737561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs77594489	chr6:77737570-77737571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs397886492	chr6:77737571-77737572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs567090227	chr6:77737592-77737593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs552642070	chr6:77737623-77737624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs115941637	chr6:77737626-77737627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs141816911	chr6:77737627-77737628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs549776647	chr6:77737644-77737645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs568264682	chr6:77737651-77737652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs62433587	chr6:77737671-77737672	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs75656041	chr6:77737725-77737726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs139228863	chr6:77737803-77737804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs201627125	chr6:77737804-77737805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs146250338	chr6:77737828-77737829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs10428816	chr6:77737871-77737872	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs112926436	chr6:77737932-77737933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs9294054	chr6:77737984-77737985	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs561151556	chr6:77737988-77737989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs71546023	chr6:77737991-77737992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs71661500	chr6:77737992-77737993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs149589065	chr6:77738008-77738009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs70974640	chr6:77738009-77738010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs10428819	chr6:77738015-77738016	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs556612815	chr6:77738078-77738079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs563417979	chr6:77738080-77738081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs114733547	chr6:77738082-77738083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs9294055	chr6:77738099-77738100	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs182224634	chr6:77738103-77738104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs564670298	chr6:77738142-77738143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs140548109	chr6:77738147-77738148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs560726707	chr6:77738170-77738171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs532052895	chr6:77738232-77738233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77736000-77740800	Weak transcription	Osteobl	bone
2	chr6:77736600-77743400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links