Variant report

Variant	esv3359222
Chromosome Location	chr19:21607427-21608464
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF708-1	chr19:21605958-21608304	ENSG00000196686

Variant related genes	Relation type
ZNF326	miRNA target sites

Extended variants
information (count: 66 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:66 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs61735754	chr19:21607444-21607445	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs370529313	chr19:21607453-21607454	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs373704839	chr19:21607463-21607464	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs182472129	chr19:21607475-21607476	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs201709398	chr19:21607503-21607504	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs200263287	chr19:21607506-21607507	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs200019691	chr19:21607517-21607518	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs201105659	chr19:21607525-21607526	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs202237831	chr19:21607526-21607527	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs138915851	chr19:21607532-21607533	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs371335967	chr19:21607534-21607535	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs185810129	chr19:21607545-21607546	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs115731114	chr19:21607567-21607568	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs372399041	chr19:21607575-21607576	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs151159046	chr19:21607670-21607671	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
16	rs1909771	chr19:21607694-21607695	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
17	rs201920955	chr19:21607695-21607696	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
18	rs115364259	chr19:21607709-21607710	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
19	rs375638999	chr19:21607715-21607716	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
20	rs139480417	chr19:21607716-21607717	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
21	rs142021141	chr19:21607749-21607750	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
22	rs550467282	chr19:21607757-21607758	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
23	rs181198606	chr19:21607765-21607766	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
24	rs542711165	chr19:21607767-21607768	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
25	rs185646052	chr19:21607793-21607794	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
26	rs139042507	chr19:21607825-21607826	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
27	rs34723025	chr19:21607879-21607880	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
28	rs397728603	chr19:21607882-21607883	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
29	rs35814204	chr19:21607886-21607887	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
30	rs540476006	chr19:21607943-21607944	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
31	rs377546184	chr19:21607986-21607987	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
32	rs565542969	chr19:21608005-21608006	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
33	rs532868743	chr19:21608016-21608017	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
34	rs190449537	chr19:21608025-21608026	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
35	rs547400916	chr19:21608053-21608054	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
36	rs563249419	chr19:21608061-21608062	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
37	rs530566697	chr19:21608066-21608067	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
38	rs549051203	chr19:21608095-21608096	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
39	rs17618778	chr19:21608110-21608111	Weak transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs181385127	chr19:21608124-21608125	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
41	rs35148123	chr19:21608153-21608154	Weak transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs72620582	chr19:21608158-21608159	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
43	rs2937163	chr19:21608186-21608187	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
44	rs538524589	chr19:21608203-21608204	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
45	rs556884720	chr19:21608208-21608209	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
46	rs575227011	chr19:21608216-21608217	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
47	rs371534368	chr19:21608242-21608243	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
48	rs555191257	chr19:21608258-21608259	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
49	rs74170708	chr19:21608264-21608265	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
50	rs76952117	chr19:21608269-21608270	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21585000-21614000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:21590600-21608200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
3	chr19:21593400-21610200	ZNF genes & repeats	Liver	Liver
4	chr19:21599600-21611000	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr19:21600000-21613000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:21600200-21608200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr19:21600800-21607800	ZNF genes & repeats	Dnd41	blood
8	chr19:21601200-21607600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr19:21602000-21608200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr19:21603400-21609400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr19:21604200-21607600	ZNF genes & repeats	Fetal Brain Female	brain
12	chr19:21604400-21609200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr19:21604400-21610400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr19:21604600-21608000	ZNF genes & repeats	Fetal Lung	lung
15	chr19:21604600-21608400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
16	chr19:21604800-21608800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr19:21605200-21608000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
18	chr19:21605600-21608000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr19:21605600-21610800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr19:21605600-21610800	Weak transcription	Ovary	ovary
21	chr19:21605800-21607600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
22	chr19:21605800-21609400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
23	chr19:21606000-21607600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
24	chr19:21606000-21608800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
25	chr19:21607200-21607600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr19:21607600-21630200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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