Variant report

Variant	esv3359280
Chromosome Location	chr6:77834321-77834685
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551338370	chr6:77834372-77834373	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs542158934	chr6:77834374-77834375	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs181603548	chr6:77834431-77834432	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs572150114	chr6:77834432-77834433	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs545975358	chr6:77834475-77834476	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs115567192	chr6:77834491-77834492	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs186283214	chr6:77834506-77834507	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs543040154	chr6:77834530-77834531	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs111923657	chr6:77834545-77834546	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs376976923	chr6:77834555-77834556	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs528281985	chr6:77834577-77834578	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs9341636	chr6:77834619-77834620	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs1114226	chr6:77834631-77834632	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs9343564	chr6:77834640-77834641	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs61430902	chr6:77834654-77834655	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs547623571	chr6:77834667-77834668	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs190608594	chr6:77834668-77834669	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77828400-77834400	Weak transcription	Gastric	stomach
2	chr6:77832400-77834800	Enhancers	NHEK	skin
3	chr6:77832600-77847600	Weak transcription	Aorta	Aorta
4	chr6:77833200-77834800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:77833400-77834400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:77833400-77834400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:77833600-77835000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:77833800-77834600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:77833800-77834800	Enhancers	HMEC	breast
10	chr6:77834200-77834400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:77834200-77834800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:77834400-77834600	Enhancers	Gastric	stomach

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