Variant report

Variant	esv3359611
Chromosome Location	chr6:165418182-165420377
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567426283	chr6:165420000-165420001	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs537660857	chr6:165420029-165420030	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs187205497	chr6:165420083-165420084	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs576381577	chr6:165420096-165420097	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs6926176	chr6:165420107-165420108	ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs6926183	chr6:165420112-165420113	ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs553708441	chr6:165420113-165420114	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs1923384	chr6:165420120-165420121	ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs536722305	chr6:165420179-165420180	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs149545206	chr6:165420195-165420196	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs56055698	chr6:165420215-165420216	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs371486104	chr6:165420229-165420230	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs191994700	chr6:165420231-165420232	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs3857510	chr6:165420233-165420234	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs543630884	chr6:165420235-165420236	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs565528122	chr6:165420248-165420249	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs577605203	chr6:165420255-165420256	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs541758091	chr6:165420272-165420273	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs6921944	chr6:165420294-165420295	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs527310842	chr6:165420304-165420305	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs370296685	chr6:165420314-165420315	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs138717391	chr6:165420347-165420348	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Ovarian cancer	21720365	CNVD
Glioblastoma multiforme	21138945	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165420000-165420200	Enhancers	Spleen	Spleen
2	chr6:165420000-165420400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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