Variant report

Variant	esv3360660
Chromosome Location	chr5:70503696-70509194
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:48)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:48 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr5:70505255-70505621	GM12878	blood:	n/a	n/a
2	BATF	chr5:70505333-70505618	GM12878	blood:	n/a	n/a
3	BCL11A	chr5:70505340-70505585	GM12878	blood:	n/a	n/a
4	BCL11A	chr5:70505318-70505550	GM12878	blood:	n/a	n/a
5	CTCF	chr5:70503766-70504062	K562	blood:	n/a	n/a
6	CTCF	chr5:70503834-70504038	K562	blood:	n/a	n/a
7	CTCF	chr5:70503627-70504189	K562	blood:	n/a	n/a
8	EBF1	chr5:70505246-70505619	GM12878	blood:	n/a	n/a
9	EBF1	chr5:70505268-70505624	GM12878	blood:	n/a	n/a
10	FOSL2	chr5:70507896-70508209	HepG2	liver:	n/a	n/a
11	GABPA	chr5:70509176-70509300	Hela-S3	cervix:	n/a	n/a
12	GATA2	chr5:70505789-70506079	K562	blood:	n/a	n/a
13	GATA2	chr5:70507137-70507463	K562	blood:	n/a	n/a
14	GATA2	chr5:70503906-70504136	K562	blood:	n/a	n/a
15	GATA2	chr5:70504375-70504584	K562	blood:	n/a	n/a
16	GATA2	chr5:70506662-70506923	K562	blood:	n/a	n/a
17	GATA2	chr5:70505111-70505573	K562	blood:	n/a	n/a
18	GATA2	chr5:70507917-70508228	K562	blood:	n/a	n/a
19	IRF4	chr5:70505258-70505605	GM12878	blood:	n/a	n/a
20	JUND	chr5:70508033-70508144	HepG2	liver:	n/a	n/a
21	PAX5	chr5:70507940-70508214	GM12878	blood:	n/a	n/a
22	PAX5	chr5:70505401-70505560	GM12878	blood:	n/a	n/a
23	PAX5	chr5:70505214-70505667	GM12878	blood:	n/a	n/a
24	PBX3	chr5:70508034-70508142	GM12878	blood:	n/a	n/a
25	POLR2A	chr5:70507931-70508201	GM12878	blood:	n/a	n/a
26	POLR2A	chr5:70507900-70508305	GM12878	blood:	n/a	n/a
27	POLR2A	chr5:70507931-70508273	GM12891	blood:	n/a	n/a
28	POLR2A	chr5:70507803-70508341	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr5:70508004-70508201	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr5:70509026-70509144	GM12878	blood:	n/a	n/a
31	POLR2A	chr5:70507952-70508202	H1-hESC	embryonic stem cell:	n/a	n/a
32	POU2F2	chr5:70507910-70508297	GM12878	blood:	n/a	chr5:70507968-70507983
33	POU2F2	chr5:70505236-70505707	GM12878	blood:	n/a	n/a
34	POU2F2	chr5:70505327-70505548	GM12878	blood:	n/a	n/a
35	SIX5	chr5:70507918-70508126	K562	blood:	n/a	n/a
36	SIX5	chr5:70504448-70504664	K562	blood:	n/a	n/a
37	SPI1	chr5:70503935-70504071	K562	blood:	n/a	n/a
38	SPI1	chr5:70504466-70504632	K562	blood:	n/a	n/a
39	SPI1	chr5:70505394-70505563	K562	blood:	n/a	n/a
40	SPI1	chr5:70505389-70505572	GM12878	blood:	n/a	n/a
41	SPI1	chr5:70503944-70504065	K562	blood:	n/a	n/a
42	SPI1	chr5:70509169-70509316	K562	blood:	n/a	n/a
43	TCF12	chr5:70505409-70505572	GM12878	blood:	n/a	n/a
44	USF1	chr5:70508526-70508641	HepG2	liver:	n/a	n/a
45	ZBTB33	chr5:70507910-70508240	K562	blood:	n/a	n/a
46	ZBTB33	chr5:70505318-70505628	K562	blood:	n/a	n/a
47	ZBTB33	chr5:70504273-70504666	K562	blood:	n/a	n/a
48	ZBTB33	chr5:70507952-70508278	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BDP1-5	chr5:70504655-70505021	NONHSAT102007

No data

Variant related genes	Relation type
ENSG00000254133	TF binding region
GUSBP9	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201437353	chr5:70504889-70504890	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs76696757	chr5:70507180-70507181	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	22032731	CNVD
Prostate cancer	21965145	CNVD
Spinal muscular atrophy	21762474	CNVD
Esophageal cancer	20955586	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Bladder cancer	21909424	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17133270	CNVD
Breast cancer	19602461	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
abnormal development	18461090	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	21045282	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Myelodysplastic syndrome	18663149	CNVD
Spinal muscular atrophy	15981080	CNVD
Spinal muscular atrophy	18839960	CNVD
Spinal muscular atrophy	19716110	CNVD
Sezary syndrome	18413736	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21990379	CNVD
Hirschsprung''s Disease	21712996	CNVD
Apoptosis	19488400	CNVD
Breast cancer	22048815	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Acute monocytic leukemia	16498392	CNVD
Colorectal cancer	20459617	CNVD
Gastric adenocarcinoma	19115996	CNVD
Spinal muscular atrophy	17160897	CNVD
Spinal muscular atrophy	17668391	CNVD
Spinal muscular atrophy	17668395	CNVD
Glioblastoma multiforme	22286061	CNVD
craniofacial dysmorphism	21918468	CNVD
Multiple myeloma	16616336	CNVD
Prostate cancer	16461572	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	21346763	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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