Variant report

Variant	esv3360779
Chromosome Location	chr6:66156181-66158479
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:125 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190473137	chr6:66156210-66156211	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs116316240	chr6:66156213-66156214	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs568289855	chr6:66156226-66156227	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs145609114	chr6:66156229-66156230	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs147747308	chr6:66156230-66156231	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs115756809	chr6:66156252-66156253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs192585962	chr6:66156349-66156350	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs545891785	chr6:66156415-66156416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs553094616	chr6:66156442-66156443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs370995492	chr6:66156475-66156476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs572887431	chr6:66156502-66156503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs148760566	chr6:66156504-66156505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs531035740	chr6:66156523-66156524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs183575215	chr6:66156546-66156547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs544750356	chr6:66156645-66156646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs116670356	chr6:66156664-66156665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs188259011	chr6:66156678-66156679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs150019227	chr6:66156712-66156713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs67497424	chr6:66156713-66156714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs200875252	chr6:66156715-66156716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs372878519	chr6:66156716-66156717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs9363360	chr6:66156724-66156725	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs552292607	chr6:66156744-66156745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs145137632	chr6:66156754-66156755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs71743128	chr6:66156755-66156756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs145134290	chr6:66156757-66156758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs374288303	chr6:66156770-66156771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs528068451	chr6:66156775-66156776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs12215670	chr6:66156792-66156793	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs181170718	chr6:66156804-66156805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs142416844	chr6:66156812-66156813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs557272399	chr6:66156843-66156844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs12196989	chr6:66156877-66156878	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs12196990	chr6:66156878-66156879	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs553029021	chr6:66156880-66156881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs573023628	chr6:66156896-66156897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs9345629	chr6:66156901-66156902	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs185513589	chr6:66156903-66156904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs12203182	chr6:66156905-66156906	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs73445191	chr6:66156927-66156928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs564809985	chr6:66156942-66156943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs578203892	chr6:66156948-66156949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs188757480	chr6:66156980-66156981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs559460586	chr6:66157011-66157012	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs17768580	chr6:66157042-66157043	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs181808582	chr6:66157061-66157062	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs187252263	chr6:66157076-66157077	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs9445549	chr6:66157091-66157092	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs550588211	chr6:66157097-66157098	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs191922000	chr6:66157103-66157104	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Dyslexia	22102821	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Retinitis pigmentosa	21519034	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66155800-66156400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:66156400-66158600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:66157000-66160800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:66157400-66158200	Enhancers	Brain Cingulate Gyrus	brain
5	chr6:66157400-66160600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:66157600-66158200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:66157600-66158400	Enhancers	Brain Substantia Nigra	brain
8	chr6:66157600-66160600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:66157600-66160600	Enhancers	Brain Hippocampus Middle	brain
10	chr6:66157800-66160400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:66157800-66160600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:66158000-66160800	Enhancers	Fetal Brain Male	brain
13	chr6:66158200-66158400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr6:66158200-66160400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:66158400-66158600	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links