Variant report
| Variant | esv3360985 |
|---|---|
| Chromosome Location | chr3:34733174-34733553 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs544851183 | chr3:34733177-34733178 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs151024777 | chr3:34733186-34733187 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs140940797 | chr3:34733214-34733215 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs370264829 | chr3:34733234-34733235 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs374980175 | chr3:34733359-34733360 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs367897226 | chr3:34733361-34733362 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs371327806 | chr3:34733365-34733366 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs35920690 | chr3:34733366-34733367 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs201083943 | chr3:34733367-34733368 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs66814200 | chr3:34733377-34733378 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs57278576 | chr3:34733379-34733380 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs141003171 | chr3:34733389-34733390 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs141589233 | chr3:34733396-34733397 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs199533821 | chr3:34733462-34733463 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs12491003 | chr3:34733463-34733464 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 16 | rs535378080 | chr3:34733464-34733465 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs193200052 | chr3:34733467-34733468 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs575727603 | chr3:34733469-34733470 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs536363265 | chr3:34733480-34733481 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs555115568 | chr3:34733486-34733487 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs554365167 | chr3:34733539-34733540 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:79)
| Disease | PMID | Source |
|---|---|---|
| Glioblastoma multiforme | 21080181 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Colorectal cancer | 21297112 | CNVD |
| Lynch syndrome | 18415027 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Urothelial carcinoma | 18382360 | CNVD |
| Melanoma | 18172304 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Insulin resistance | 16721378 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Multiple myeloma | 17077331 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Neuroblastoma | 21484798 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Oral cancer | 19627613 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Epithelial cancer | 22065749 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Basal cell lymphoma | 21115979 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Pancreatic endocrine tumor | 20981439 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Cutaneous squamous cell carcinomas | 19131950 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Uveal melanoma | 21693616 | CNVD |
| Retinoblastoma | 21504564 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Lung cancer | 20668451 | CNVD |
| Breast cancer | 20668451 | CNVD |
| Cancer | 20668451 | CNVD |
| Ovarian cancer | 20668451 | CNVD |
| Pancreas cancer | 20668451 | CNVD |
| Prostate cancer | 20668451 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Esophageal cancer | 20955586 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Myofibroblastic sarcoma | 19369631 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Uveal melanoma | 20484589 | CNVD |
| Autism | 22495311 | CNVD |
| Melanoma | 20688739 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Cancer | 21183584 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Esophageal squamous carcinoma | 17470683 | CNVD |
| Wilms tumour | 17204608 | CNVD |
| Biliary cancer | 19435499 | CNVD |
| Non-small cell lung cancer | 20864512 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Kartagener syndrome | 16639409 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Cancer | 20164919 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Bipolar disorder | 20877625 | CNVD |
| Bipolar disorder | 21956041 | CNVD |
| Bipolar disorder | 22241247 | CNVD |
| Biliary cancer | 18923514 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:34722200-34734400 | Weak transcription | Thymus | Thymus |
