Variant report

Variant	esv3361177
Chromosome Location	chr6:56189443-56191691
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:146 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs185313719	chr6:56189450-56189451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs549422960	chr6:56189458-56189459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs7775317	chr6:56189465-56189466	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs566316425	chr6:56189477-56189478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs140226728	chr6:56189506-56189507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs535395132	chr6:56189547-56189548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs560963026	chr6:56189555-56189556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs190210030	chr6:56189563-56189564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs115431552	chr6:56189624-56189625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs10733185	chr6:56189626-56189627	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs145346280	chr6:56189638-56189639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs10733186	chr6:56189640-56189641	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs533664988	chr6:56189701-56189702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs193147094	chr6:56189722-56189723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs146437231	chr6:56189732-56189733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs547629603	chr6:56189739-56189740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs184725453	chr6:56189792-56189793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs188311056	chr6:56189793-56189794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs10755782	chr6:56189800-56189801	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs116339312	chr6:56189831-56189832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs11965828	chr6:56189838-56189839	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs10755783	chr6:56189856-56189857	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs551920290	chr6:56189899-56189900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs559006870	chr6:56189901-56189902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs529843156	chr6:56189935-56189936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs571444458	chr6:56189951-56189952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs367756035	chr6:56189956-56189957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs371453051	chr6:56189969-56189970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs537128789	chr6:56189988-56189989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs112339492	chr6:56190013-56190014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs72544262	chr6:56190040-56190041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs140812633	chr6:56190069-56190070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs199960035	chr6:56190073-56190074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs80197867	chr6:56190090-56190091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs376035753	chr6:56190115-56190116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs369490630	chr6:56190119-56190120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs372748893	chr6:56190129-56190130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs376277604	chr6:56190130-56190131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs564166577	chr6:56190141-56190142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs370705527	chr6:56190154-56190155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs373566725	chr6:56190165-56190166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs376435894	chr6:56190175-56190176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs370970517	chr6:56190179-56190180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs13193563	chr6:56190180-56190181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs13193566	chr6:56190191-56190192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs13209715	chr6:56190192-56190193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs180739114	chr6:56190206-56190207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs374375881	chr6:56190207-56190208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs369910722	chr6:56190210-56190211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs367597231	chr6:56190211-56190212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Neurocytoma	17123091	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Neuroblastoma	19686582	CNVD
Neuroblastoma	17289879	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	16912164	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Central neurocytomas	17123091	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56186800-56189600	Weak transcription	Aorta	Aorta
2	chr6:56189400-56193600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links