Variant report

Variant	esv3361193
Chromosome Location	chr6:110580459-110584157
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 158 )
Associated
traits (count: 115 )

Variant overlapped rSNPs/rCNVs (count:158 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs368114409	chr6:110580465-110580466	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs531480649	chr6:110580470-110580471	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs113742160	chr6:110580531-110580532	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs530050325	chr6:110580543-110580544	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs533905335	chr6:110580568-110580569	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs553905423	chr6:110580569-110580570	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs567113400	chr6:110580618-110580619	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs539228790	chr6:110580640-110580641	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs558835136	chr6:110580664-110580665	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs569409272	chr6:110580665-110580666	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs546648656	chr6:110580673-110580674	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs557438172	chr6:110580690-110580691	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs538119451	chr6:110580703-110580704	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs554576663	chr6:110580708-110580709	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs566785746	chr6:110580735-110580736	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs375914403	chr6:110580766-110580767	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs574470000	chr6:110580794-110580795	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs144484760	chr6:110580804-110580805	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538540316	chr6:110580827-110580828	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs146628318	chr6:110580833-110580834	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs190286018	chr6:110580856-110580857	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs546001706	chr6:110580857-110580858	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs182541532	chr6:110580858-110580859	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs149223021	chr6:110580865-110580866	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs7774900	chr6:110580916-110580917	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs11757347	chr6:110580948-110580949	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs561715062	chr6:110581024-110581025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs527272064	chr6:110581128-110581129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs569069994	chr6:110581135-110581136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs34565055	chr6:110581148-110581149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs377556386	chr6:110581169-110581170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186864277	chr6:110581177-110581178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs192160727	chr6:110581235-110581236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs111808248	chr6:110581253-110581254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs140774366	chr6:110581280-110581281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs538557979	chr6:110581311-110581312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs554838130	chr6:110581330-110581331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200429598	chr6:110581334-110581335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs574533446	chr6:110581346-110581347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs150124087	chr6:110581369-110581370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs553722579	chr6:110581396-110581397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs138810714	chr6:110581420-110581421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs545966251	chr6:110581432-110581433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs562733182	chr6:110581433-110581434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs576155263	chr6:110581455-110581456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs185059549	chr6:110581498-110581499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs561974387	chr6:110581535-110581536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs142817989	chr6:110581544-110581545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs547435158	chr6:110581602-110581603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs146989153	chr6:110581707-110581708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:115)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Basal cell lymphoma	17170743	CNVD
Prostate cancer	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Autism	17483303	CNVD
Chordoma	21602918	CNVD
Kartagener syndrome	16639409	CNVD
abnormal development	18461090	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Systemic lupus erythematosus	19220326	CNVD
Cancer	17160897	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Acute lymphoblastic leukemia	17229543	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Mental retardation	17621639	CNVD
Intellectual disability	22102821	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110550600-110608200	Weak transcription	Fetal Kidney	kidney
2	chr6:110567400-110604600	Weak transcription	Ovary	ovary
3	chr6:110567600-110604600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:110573600-110604600	Weak transcription	Aorta	Aorta
5	chr6:110577400-110591600	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:110579400-110589000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:110580200-110580800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:110580200-110581000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:110581200-110581600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links