Variant report

Variant	esv3361831
Chromosome Location	chr6:131822459-131826457
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARG1-2	chr6:131826150-131826462	FPKM1_group_28441_transcript_1

Extended variants
information (count: 193 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:193 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113019168	chr6:131822488-131822489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs562662219	chr6:131822495-131822496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs529987506	chr6:131822519-131822520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs75684772	chr6:131822538-131822539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs182216441	chr6:131822549-131822550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs527619938	chr6:131822574-131822575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs140948504	chr6:131822591-131822592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs570628225	chr6:131822593-131822594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs531560314	chr6:131822620-131822621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs549855425	chr6:131822638-131822639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs568171981	chr6:131822700-131822701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs186180468	chr6:131822707-131822708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553534871	chr6:131822721-131822722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs567131091	chr6:131822792-131822793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs552231781	chr6:131822841-131822842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs2781625	chr6:131822855-131822856	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs572429357	chr6:131822862-131822863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs189865783	chr6:131822891-131822892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs544401196	chr6:131822943-131822944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs556195429	chr6:131822952-131822953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs180820722	chr6:131822968-131822969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs73552299	chr6:131822973-131822974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs73554204	chr6:131823023-131823024	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs527702597	chr6:131823039-131823040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs545751678	chr6:131823071-131823072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs2781626	chr6:131823079-131823080	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs531494479	chr6:131823132-131823133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs550041102	chr6:131823136-131823137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs144912414	chr6:131823138-131823139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs78657280	chr6:131823141-131823142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs529007185	chr6:131823145-131823146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs547352895	chr6:131823150-131823151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs184880452	chr6:131823151-131823152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs546684258	chr6:131823169-131823170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs190131045	chr6:131823211-131823212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs2781627	chr6:131823224-131823225	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs570815797	chr6:131823230-131823231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs117371627	chr6:131823235-131823236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs556369216	chr6:131823299-131823300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs574862919	chr6:131823326-131823327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs541926203	chr6:131823348-131823349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs554266098	chr6:131823357-131823358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs572303821	chr6:131823360-131823361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs546189950	chr6:131823394-131823395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs73775659	chr6:131823460-131823461	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs570040934	chr6:131823483-131823484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs373476132	chr6:131823492-131823493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs147948344	chr6:131823508-131823509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543619375	chr6:131823598-131823599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs140216242	chr6:131823607-131823608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Gastric cancer	17908304	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21785460	CNVD
Kartagener syndrome	16639409	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Renal cell carcinoma	18592004	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131819800-131830800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:131821400-131824600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:131824200-131824800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:131824200-131825400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:131824400-131824800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:131824400-131825400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:131824600-131826600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:131824800-131825400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:131824800-131828600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:131824800-131830000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:131825400-131826200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:131825400-131830600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:131825400-131830800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:131826200-131826800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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