Variant report
Variant | esv3363001 |
---|---|
Chromosome Location | chr20:16625437-16625796 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:16617985..16620145-chr20:16625485..16627795,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs560033165 | chr20:16625455-16625456 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs527356414 | chr20:16625478-16625479 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs552836050 | chr20:16625488-16625489 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs6111220 | chr20:16625496-16625497 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
5 | rs143052353 | chr20:16625507-16625508 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs545162755 | chr20:16625508-16625509 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs76040346 | chr20:16625539-16625540 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs144259376 | chr20:16625542-16625543 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs535520032 | chr20:16625560-16625561 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs563660375 | chr20:16625570-16625571 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs967604 | chr20:16625582-16625583 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs145889175 | chr20:16625585-16625586 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs375770241 | chr20:16625601-16625602 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs531366246 | chr20:16625602-16625603 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs553295661 | chr20:16625607-16625608 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs370393840 | chr20:16625608-16625609 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs57849548 | chr20:16625610-16625611 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs6080347 | chr20:16625648-16625649 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs180922722 | chr20:16625727-16625728 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs576602487 | chr20:16625737-16625738 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs34051240 | chr20:16625756-16625757 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs74598414 | chr20:16625794-16625795 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Breast cancer | 16397240 | CNVD |
abortions and stillbirths | 19751515 | CNVD |
Wilms tumour | 21544195 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 16272173 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Oral cancer | 19627613 | CNVD |
colon cancer | 17210682 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 16751803 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Central neurocytomas | 17123091 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Gastric cancer | 17908304 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Colorectal cancer | 21645411 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Autism | 22495311 | CNVD |
Glaucoma | 21310917 | CNVD |
Alagille syndrome | 22470819 | CNVD |
Lung cancer | 16773561 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Alagille syndrome | 17576883 | CNVD |
Anaplastic large cell lymphoma | 18179710 | CNVD |
Prostate cancer | 18632612 | CNVD |
Ewing''s sarcoma | 18628472 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Leukemia | 18628472 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Kabuki syndrome | 21720541 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Neurocytoma | 17123091 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Breast cancer | 21364760 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:16605600-16628800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr20:16623800-16627800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |