Variant report

Variant	esv3363115
Chromosome Location	chr4:651852-655150
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:70)
CpG islands
(count:427)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:70 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:652831-653271	HepG2	liver:	n/a	n/a
2	BHLHE40	chr4:652747-653269	HepG2	liver:	n/a	n/a
3	CEBPZ	chr4:652988-653024	HepG2	liver:	n/a	n/a
4	CHD2	chr4:652751-652986	HepG2	liver:	n/a	n/a
5	CTCF	chr4:653300-653450	HepG2	liver:	n/a	n/a
6	CTCF	chr4:653260-653410	HepG2	liver:	n/a	n/a
7	EP300	chr4:653681-653803	HepG2	liver:	n/a	n/a
8	EP300	chr4:652811-653280	HepG2	liver:	n/a	n/a
9	EP300	chr4:652790-653234	HepG2	liver:	n/a	n/a
10	FOXA1	chr4:652691-653262	HepG2	liver:	n/a	n/a
11	FOXA1	chr4:652740-653259	HepG2	liver:	n/a	n/a
12	FOXA1	chr4:652671-653343	HepG2	liver:	n/a	n/a
13	FOXA1	chr4:652659-653376	HepG2	liver:	n/a	n/a
14	FOXA2	chr4:652511-653380	HepG2	liver:	n/a	n/a
15	FOXA2	chr4:652853-653231	HepG2	liver:	n/a	n/a
16	HNF4A	chr4:652893-653264	HepG2	liver:	n/a	n/a
17	JUND	chr4:652890-653227	HepG2	liver:	n/a	n/a
18	JUND	chr4:652814-653201	HepG2	liver:	n/a	n/a
19	MAX	chr4:652724-653576	HepG2	liver:	n/a	chr4:653422-653432 chr4:653369-653379 chr4:652843-652852 chr4:653434-653444 chr4:653412-653422
20	MAX	chr4:653136-653620	H1-hESC	embryonic stem cell:	n/a	chr4:653422-653432 chr4:653369-653379 chr4:653434-653444 chr4:653412-653422
21	MAX	chr4:652437-653567	HepG2	liver:	n/a	chr4:653422-653432 chr4:653369-653379 chr4:652843-652852 chr4:653434-653444 chr4:653412-653422
22	MAX	chr4:653155-653698	HUVEC	blood vessel:	n/a	chr4:653422-653432 chr4:653369-653379 chr4:653434-653444 chr4:653412-653422
23	MAX	chr4:653155-653512	A549	lung:	n/a	chr4:653422-653432 chr4:653369-653379 chr4:653434-653444 chr4:653412-653422
24	MAX	chr4:653180-653624	NB4	blood:	n/a	chr4:653422-653432 chr4:653369-653379 chr4:653434-653444 chr4:653412-653422
25	MXI1	chr4:652723-653579	HepG2	liver:	n/a	n/a
26	MYBL2	chr4:652653-653326	HepG2	liver:	n/a	n/a
27	MYC	chr4:652883-652921	HepG2	liver:	n/a	n/a
28	MYC	chr4:652923-652987	HepG2	liver:	n/a	n/a
29	MYC	chr4:652989-653050	HepG2	liver:	n/a	n/a
30	NFIC	chr4:652755-653269	HepG2	liver:	n/a	n/a
31	NR2C2	chr4:653286-653799	GM12878	blood:	n/a	n/a
32	NR2C2	chr4:651264-652307	HepG2	liver:	n/a	n/a
33	NR2F2	chr4:651141-652387	K562	blood:	n/a	n/a
34	NR2F2	chr4:651092-652404	K562	blood:	n/a	n/a
35	NR2F2	chr4:651086-652523	MCF-7	breast:	n/a	n/a
36	NR2F2	chr4:651430-652489	HepG2	liver:	n/a	n/a
37	NR2F2	chr4:651325-652481	HepG2	liver:	n/a	n/a
38	POLR2A	chr4:651842-652079	GM12878	blood:	n/a	n/a
39	POLR2A	chr4:653134-653501	H1-hESC	embryonic stem cell:	n/a	n/a
40	POLR2A	chr4:653308-653419	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr4:653238-653511	GM12878	blood:	n/a	n/a
42	POLR2A	chr4:651168-651870	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr4:653707-653902	GM12878	blood:	n/a	n/a
44	POLR2A	chr4:653247-653414	Gliobla	brain:	n/a	n/a
45	POLR2A	chr4:651884-652383	H1-hESC	embryonic stem cell:	n/a	n/a
46	POLR2A	chr4:651163-652297	K562	blood:	n/a	n/a
47	POLR2A	chr4:652589-652650	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr4:651059-651923	H1-hESC	embryonic stem cell:	n/a	n/a
49	POLR2A	chr4:652768-652813	H1-hESC	embryonic stem cell:	n/a	n/a
50	POLR2A	chr4:653442-653561	H1-hESC	embryonic stem cell:	n/a	n/a

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:652527-652577	GM12878	blood:	n/a
2	chr4:652702-652752	AoSMC	blood vessel:	n/a
3	chr4:652702-652752	K562	blood:	n/a
4	chr4:652527-652577	Jurkat	blood:	n/a
5	chr4:652702-652752	AG09309	skin:	n/a
6	chr4:652907-652957	AG09309	skin:	n/a
7	chr4:652702-652752	NH-A	brain:	n/a
8	chr4:652751-652801	HL-60	blood:	n/a
9	chr4:652527-652577	GM12892	blood:	n/a
10	chr4:652527-652577	NHDF-neo	bronchial:	n/a
11	chr4:653615-653665	HCM	heart:	n/a
12	chr4:653615-653665	HepG2	liver:	n/a
13	chr4:652891-652941	PrEC	prostate:	n/a
14	chr4:652527-652577	CMK	blood:	n/a
15	chr4:652527-652577	ProgFib	skin:	n/a
16	chr4:653615-653665	HPAEpiC	pulmonary alveolar:	n/a
17	chr4:652751-652801	AG04449	skin:	fetal
18	chr4:652907-652957	ECC-1	luminal epithelium:	n/a
19	chr4:652527-652577	H1-hESC	embryonic stem cell:	embryo
20	chr4:653615-653665	HRE	kidney:	n/a
21	chr4:652891-652941	HIPEpiC	eye:	n/a
22	chr4:652907-652957	AoSMC	blood vessel:	n/a
23	chr4:652751-652801	SK-N-SH	brain:	n/a
24	chr4:652823-652873	SK-N-MC	brain:	n/a
25	chr4:653615-653665	GM12891	blood:	n/a
26	chr4:652823-652873	ECC-1	luminal epithelium:	n/a
27	chr4:652891-652941	NHDF-neo	bronchial:	n/a
28	chr4:652751-652801	PFSK-1	brain:	n/a
29	chr4:652751-652801	HEEpiC	esophagus:	n/a
30	chr4:652907-652957	GM06990	blood:	n/a
31	chr4:652702-652752	ProgFib	skin:	n/a
32	chr4:652907-652957	HCPEpiC	choroid plexus:	n/a
33	chr4:653615-653665	HIPEpiC	eye:	n/a
34	chr4:652891-652941	GM12891	blood:	n/a
35	chr4:652751-652801	GM19239	blood:	n/a
36	chr4:652751-652801	PANC-1	pancreas:	n/a
37	chr4:652823-652873	NHDF-neo	bronchial:	n/a
38	chr4:652702-652752	PANC-1	pancreas:	n/a
39	chr4:652702-652752	HepG2	liver:	n/a
40	chr4:652702-652752	AG04449	skin:	fetal
41	chr4:652907-652957	U87	brain:	n/a
42	chr4:652751-652801	HCPEpiC	choroid plexus:	n/a
43	chr4:652907-652957	MCF10A-Er-Src	breast:	n/a
44	chr4:652823-652873	GM12878	blood:	n/a
45	chr4:652527-652577	LNCaP	prostate:	n/a
46	chr4:652907-652957	CMK	blood:	n/a
47	chr4:652891-652941	HEEpiC	esophagus:	n/a
48	chr4:652907-652957	HPAEpiC	pulmonary alveolar:	n/a
49	chr4:652907-652957	AG09319	gingival:	n/a
50	chr4:652702-652752	ECC-1	luminal epithelium:	n/a

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:649938..652851-chr4:653641..657433,6	K562	blood:
2	chr4:642131..644821-chr4:649750..652284,2	MCF-7	breast:
3	chr4:646849..649113-chr4:654761..657491,3	K562	blood:
4	chr11:116512208..116512892-chr4:653530..654530,4	MCF-7	breast:
5	chr4:613849..616261-chr4:650426..653017,2	K562	blood:
6	chr4:644162..647846-chr4:649268..652076,4	MCF-7	breast:
7	chr4:641525..644066-chr4:652058..654958,2	K562	blood:
8	chr4:647827..650169-chr4:651801..653823,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATP5I-5	chr4:654998-655734	ENSG00000272927.1

No data

Variant related genes	Relation type
ENSG00000242686	TF binding region
PDE6B	TF binding region
ENSG00000242686	CpG island
PDE6B	CpG island
ENSG00000242686	chromatin interactions
ENSG00000272927	chromatin interactions
ENSG00000133256	chromatin interactions

Extended variants
information (count: 212 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:212 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs181933471	chr4:651852-651853	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs530675186	chr4:651869-651870	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs548903584	chr4:651898-651899	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs551679612	chr4:651899-651900	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs186745591	chr4:651929-651930	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs566483581	chr4:651948-651949	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs534342507	chr4:651949-651950	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs546271728	chr4:651966-651967	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs115062305	chr4:651968-651969	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs538749031	chr4:651971-651972	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs558024430	chr4:651996-651997	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs576590266	chr4:652000-652001	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs537335420	chr4:652001-652002	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs73056602	chr4:652039-652040	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
15	rs555521126	chr4:652067-652068	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs139917815	chr4:652069-652070	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs541473186	chr4:652096-652097	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs559805750	chr4:652101-652102	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs149829857	chr4:652130-652131	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs577998961	chr4:652269-652270	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs545493382	chr4:652279-652280	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs563328421	chr4:652280-652281	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs530777377	chr4:652286-652287	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs548841352	chr4:652329-652330	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs146691227	chr4:652330-652331	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs73219282	chr4:652349-652350	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs546162537	chr4:652374-652375	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs192053465	chr4:652400-652401	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs182922963	chr4:652401-652402	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs186395082	chr4:652475-652476	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs570147627	chr4:652480-652481	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs537670102	chr4:652542-652543	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs557082487	chr4:652551-652552	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs556081812	chr4:652581-652582	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs190159296	chr4:652592-652593	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs376122906	chr4:652621-652622	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs535338968	chr4:652672-652673	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs112576560	chr4:652675-652676	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs370749360	chr4:652681-652682	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs373370425	chr4:652701-652702	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs377511027	chr4:652702-652703	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs370704907	chr4:652716-652717	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs200081409	chr4:652723-652724	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs182071364	chr4:652751-652752	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs140203507	chr4:652752-652753	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs143908642	chr4:652753-652754	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs150865214	chr4:652758-652759	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs375032863	chr4:652759-652760	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs200018423	chr4:652780-652781	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs200443661	chr4:652785-652786	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Wolf-Hirschhorn syndrome	21549014	CNVD
Breast cancer	21806811	CNVD
Wolf-Hirschhorn syndrome	22283845	CNVD
Wolf-Hirschhorn syndrome	16773131	CNVD
Mental retardation	16773131	CNVD
Wolf-Hirschhorn syndrome	22470819	CNVD
Wolf-Hirschhorn syndrome	18541967	CNVD
sporadic birth defects	19047251	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Retinitis pigmentosa	18421352	CNVD
Wolf-Hirschhorn syndrome	19259404	CNVD
Bladder cancer	19242612	CNVD
Breast cancer	19242612	CNVD
Congenital anomalies of the kidney and urinary tract	19242612	CNVD
abnormal development	18461090	CNVD
Olfactory neuroblastoma	18408657	CNVD
Wilms tumour	21544195	CNVD
Melanoma	20688739	CNVD
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17142309	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Developmental delay	21147756	CNVD
Urothelial carcinoma	21177765	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Type 2 diabetes	21754918	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21509527	CNVD
Glioma	20126413	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:631400-657000	Weak transcription	Right Atrium	heart
2	chr4:641800-657000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:642200-652800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:642400-654600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:642800-657000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:643000-657000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:645800-656800	Weak transcription	Gastric	stomach
8	chr4:648400-657000	Weak transcription	Right Ventricle	heart
9	chr4:648800-653400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:649000-652800	Weak transcription	Brain Germinal Matrix	brain
11	chr4:649200-652800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:649200-653000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:649800-653200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:649800-655600	Weak transcription	Thymus	Thymus
15	chr4:650000-653200	Weak transcription	Fetal Brain Female	brain
16	chr4:650000-654000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:650000-654200	Enhancers	HepG2	liver
18	chr4:650200-652800	Weak transcription	Brain Substantia Nigra	brain
19	chr4:650600-652600	Weak transcription	Brain Anterior Caudate	brain
20	chr4:650600-652800	Weak transcription	Brain Angular Gyrus	brain
21	chr4:650800-652800	Weak transcription	Primary T cells from cord blood	blood
22	chr4:650800-656000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:651000-652800	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:651000-653200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:651000-653600	Weak transcription	Fetal Brain Male	brain
26	chr4:651200-652200	Enhancers	Spleen	Spleen
27	chr4:651200-653200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr4:651200-654400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:651400-653000	Enhancers	Lung	lung
30	chr4:651400-653200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:651400-653200	Weak transcription	Dnd41	blood
32	chr4:651400-653400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:651400-656400	Weak transcription	Pancreas	Pancrea
34	chr4:651600-653200	Weak transcription	Fetal Intestine Small	intestine
35	chr4:651600-657000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr4:651600-657200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr4:651800-653200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr4:651800-656800	Weak transcription	Primary B cells from cord blood	blood
39	chr4:652000-653600	Weak transcription	Fetal Stomach	stomach
40	chr4:652000-656800	Weak transcription	Fetal Lung	lung
41	chr4:652200-654000	Genic enhancers	Spleen	Spleen
42	chr4:652400-655200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:652400-656800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr4:652600-654000	Strong transcription	Brain Anterior Caudate	brain
45	chr4:652600-656800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr4:652600-656800	Weak transcription	Fetal Thymus	thymus
47	chr4:652800-653600	Strong transcription	Primary T cells from cord blood	blood
48	chr4:652800-653600	Strong transcription	Brain Angular Gyrus	brain
49	chr4:652800-653600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
50	chr4:652800-653800	Strong transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links