Variant report

Variant	esv3363319
Chromosome Location	chr19:21745387-21745818
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF100-3	chr19:21744136-21747283	XLOC_013263

Extended variants
information (count: 11 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs35362327	chr19:21745404-21745405	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs111449312	chr19:21745466-21745467	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs538830173	chr19:21745484-21745485	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs549779814	chr19:21745500-21745501	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs559213024	chr19:21745540-21745541	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs528897292	chr19:21745594-21745595	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs534478600	chr19:21745620-21745621	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs547147792	chr19:21745629-21745630	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs112094104	chr19:21745660-21745661	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs201270293	chr19:21745785-21745786	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs8113736	chr19:21745809-21745810	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21737200-21747200	ZNF genes & repeats	Fetal Intestine Small	intestine
2	chr19:21738000-21749400	Weak transcription	Left Ventricle	heart
3	chr19:21738000-21751400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr19:21738600-21751600	Weak transcription	Osteobl	bone
5	chr19:21738800-21746000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr19:21738800-21746400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr19:21739400-21751200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr19:21740200-21746400	ZNF genes & repeats	Fetal Intestine Large	intestine
9	chr19:21740600-21750600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr19:21741600-21746000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr19:21742800-21750600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr19:21743000-21746400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr19:21743200-21746000	Weak transcription	Primary T cells from cord blood	blood
14	chr19:21743200-21746000	Weak transcription	Adipose Nuclei	Adipose
15	chr19:21743200-21746000	Weak transcription	Ovary	ovary
16	chr19:21743200-21750400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr19:21743400-21745800	ZNF genes & repeats	Fetal Stomach	stomach
18	chr19:21743600-21751600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr19:21744200-21747000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
20	chr19:21744800-21745800	Weak transcription	Dnd41	blood
21	chr19:21744800-21746000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr19:21744800-21746000	Weak transcription	Fetal Lung	lung
23	chr19:21744800-21746600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr19:21744800-21747600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr19:21744800-21750600	Weak transcription	Colonic Mucosa	Colon
26	chr19:21744800-21750600	Weak transcription	Fetal Kidney	kidney
27	chr19:21745000-21746000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr19:21745000-21746200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr19:21745000-21746200	Weak transcription	Thymus	Thymus
30	chr19:21745000-21750600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr19:21745200-21746000	Weak transcription	Liver	Liver
32	chr19:21745200-21746600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr19:21745200-21749400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr19:21745800-21746800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr19:21745800-21747200	Strong transcription	Fetal Stomach	stomach
36	chr19:21745800-21748000	Strong transcription	Dnd41	blood

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