Variant report

Variant	esv3364024
Chromosome Location	chr12:10656185-10658183
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr12:10658107-10658539	GM12878	blood:	n/a	chr12:10658484-10658495
2	POLR2A	chr12:10656624-10656820	K562	blood:	n/a	n/a
3	POLR2A	chr12:10657429-10657609	K562	blood:	n/a	n/a
4	POLR2A	chr12:10656049-10656241	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000180574	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551853043	chr12:10656251-10656252	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs565802433	chr12:10656258-10656259	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs534397317	chr12:10656307-10656308	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs61912058	chr12:10656318-10656319	Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs567851829	chr12:10656334-10656335	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs536802972	chr12:10656341-10656342	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs7976078	chr12:10656443-10656444	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs11376491	chr12:10656474-10656475	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs576635605	chr12:10656480-10656481	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs4348990	chr12:10656483-10656484	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs558666546	chr12:10656543-10656544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs192720871	chr12:10656571-10656572	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs182393636	chr12:10656648-10656649	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs575046428	chr12:10656658-10656659	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs561005154	chr12:10656731-10656732	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs574293327	chr12:10656742-10656743	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs75635462	chr12:10656809-10656810	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs369440344	chr12:10656818-10656819	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs192110363	chr12:10657441-10657442	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs184329660	chr12:10657456-10657457	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs577589418	chr12:10657499-10657500	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs55791361	chr12:10657582-10657583	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs370238473	chr12:10657602-10657603	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs565948112	chr12:10657608-10657609	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs77349267	chr12:10658131-10658132	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs552596801	chr12:10658178-10658179	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Acute lymphoblastic leukemia	17690704	CNVD
Medulloblastoma	16968546	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Hepatocellular carcinoma	16750200	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Breast cancer	22032731	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	21965145	CNVD
Acute myeloid leukemia	16864856	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Disorders of sex development	21048976	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Prostate cancer	19156837	CNVD
Emphysema	19352772	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Malignant germ cell tumour	17285132	CNVD
Melanoma	18172304	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	21264507	CNVD
Cancer	16751803	CNVD
Testicular cancer	18059402	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Seminomas	18059402	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Testicular germ cell tumor	18059402	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21858162	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21611746	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Squamous cell cancer	19607727	CNVD
Prostate cancer	16573809	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute myeloid leukemia	17268525	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10652400-10656800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr12:10656000-10656400	Flanking Active TSS	Brain Hippocampus Middle	brain

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