Variant report

Variant	esv3364857
Chromosome Location	chr12:85650021-85652019
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:63 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575767599	chr12:85650030-85650031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs372854590	chr12:85650061-85650062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs544390868	chr12:85650107-85650108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs542398824	chr12:85650209-85650210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556385718	chr12:85650225-85650226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs11834339	chr12:85650237-85650238	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs545385809	chr12:85650238-85650239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs190104188	chr12:85650240-85650241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs374887989	chr12:85650256-85650257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs181145957	chr12:85650257-85650258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs145140939	chr12:85650262-85650263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs572535400	chr12:85650265-85650266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs79299881	chr12:85650363-85650364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs561350378	chr12:85650378-85650379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs531890218	chr12:85650384-85650385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs113146003	chr12:85650401-85650402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs549957402	chr12:85650421-85650422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs185339168	chr12:85650454-85650455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs142262836	chr12:85650515-85650516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs9651975	chr12:85650539-85650540	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs564796345	chr12:85650586-85650587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs190198645	chr12:85650594-85650595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs35609457	chr12:85650623-85650624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs535856235	chr12:85650624-85650625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs547822815	chr12:85650659-85650660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368345622	chr12:85650814-85650815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs11837882	chr12:85650819-85650820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs372685290	chr12:85650822-85650823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs541495250	chr12:85650824-85650825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs530643270	chr12:85650834-85650835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs182060879	chr12:85650851-85650852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs12321499	chr12:85650853-85650854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs377314984	chr12:85650861-85650862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs369912096	chr12:85650862-85650863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs371679444	chr12:85650865-85650866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs376220732	chr12:85650882-85650883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs374994329	chr12:85650885-85650886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs186003354	chr12:85650891-85650892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs536752679	chr12:85650896-85650897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs36128951	chr12:85650902-85650903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs370261873	chr12:85650906-85650907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs11116762	chr12:85650914-85650915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs77083530	chr12:85650915-85650916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs369375998	chr12:85650921-85650922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs372954886	chr12:85650927-85650928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs376191856	chr12:85650940-85650941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs192266361	chr12:85650941-85650942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs373421566	chr12:85650949-85650950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs374597570	chr12:85650952-85650953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs376331561	chr12:85650954-85650955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17899364	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	22032731	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Ovarian cancer	21720365	CNVD
Acute myeloid leukemia	20729466	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Renal cell carcinoma	18194544	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	21364760	CNVD
Cancer	20164920	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85650000-85651200	Weak transcription	A549	lung
2	chr12:85651200-85651400	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links