Variant report

Variant	esv3365358
Chromosome Location	chr7:63967467-63969665
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:63967441..63969931-chr7:63971769..63973601,4	MCF-7	breast:
2	chr7:63959858..63961962-chr7:63968204..63970636,2	MCF-7	breast:
3	chr7:63968985..63971890-chr7:63971952..63973743,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF107-7	chr7:63967985-63968194	ucscGeneNc_uc003ttk_1

Variant related genes	Relation type
ENSG00000228653	chromatin interactions

Extended variants
information (count: 78 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:78 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs186872588	chr7:63967564-63967565	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs547205088	chr7:63967617-63967618	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs78405676	chr7:63967639-63967640	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs530317086	chr7:63967664-63967665	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs189787972	chr7:63967735-63967736	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs535891581	chr7:63967756-63967757	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs555692931	chr7:63967768-63967769	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs534393539	chr7:63967775-63967776	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs551035426	chr7:63967779-63967780	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs570928960	chr7:63967800-63967801	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs536605240	chr7:63967872-63967873	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs548912449	chr7:63967896-63967897	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs34921928	chr7:63967897-63967898	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs398004947	chr7:63967907-63967908	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs569623307	chr7:63967912-63967913	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs12674124	chr7:63967921-63967922	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs199977591	chr7:63967925-63967926	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs558423557	chr7:63967936-63967937	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs141860324	chr7:63967973-63967974	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs376338757	chr7:63967980-63967981	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs143420653	chr7:63967981-63967982	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs62461508	chr7:63968070-63968071	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs147987101	chr7:63968100-63968101	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs572172900	chr7:63968101-63968102	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs12666005	chr7:63968165-63968166	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs554778032	chr7:63968191-63968192	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs200876828	chr7:63968203-63968204	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs59061215	chr7:63968238-63968239	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs61580123	chr7:63968240-63968241	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs61241751	chr7:63968250-63968251	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs565344696	chr7:63968258-63968259	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs575601558	chr7:63968270-63968271	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs182047278	chr7:63968272-63968273	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs373533646	chr7:63968300-63968301	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs189084494	chr7:63968324-63968325	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs561671006	chr7:63968330-63968331	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs574850480	chr7:63968421-63968422	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs530316970	chr7:63968468-63968469	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs193140376	chr7:63968472-63968473	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs72194929	chr7:63968502-63968503	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs57303948	chr7:63968516-63968517	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	mRNA abundance
42	rs545628923	chr7:63968520-63968521	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs58891724	chr7:63968521-63968522	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs57548422	chr7:63968523-63968524	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs60970942	chr7:63968525-63968526	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs149461294	chr7:63968526-63968527	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs532536947	chr7:63968555-63968556	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs150544400	chr7:63968581-63968582	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs188487859	chr7:63968741-63968742	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs562596532	chr7:63968763-63968764	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63956200-63968800	Weak transcription	Ovary	ovary
2	chr7:63961400-63967600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:63961800-63969000	Weak transcription	HSMM	muscle
4	chr7:63963400-63969000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:63963400-63970000	Weak transcription	Hela-S3	cervix
6	chr7:63964400-63969000	Weak transcription	Psoas Muscle	Psoas
7	chr7:63964600-63968800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:63964600-63997800	ZNF genes & repeats	Liver	Liver
9	chr7:63965000-63968600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:63965000-63969600	Weak transcription	Left Ventricle	heart
11	chr7:63965000-63970000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr7:63965000-63970400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:63965000-63994800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:63965600-63968800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:63965800-63968800	Weak transcription	Dnd41	blood
16	chr7:63966200-63968800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:63966200-63997400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:63966400-63968800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:63966400-63969000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:63966400-63969400	Weak transcription	NH-A	brain
21	chr7:63966400-63975000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:63966600-63969000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:63966600-63981600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:63966800-63968600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:63966800-63970000	Weak transcription	Aorta	Aorta
26	chr7:63967200-63968000	ZNF genes & repeats	Fetal Lung	lung
27	chr7:63967400-63967800	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr7:63967400-63968000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
29	chr7:63967400-63973600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:63967600-63967800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
31	chr7:63967600-63968200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:63967600-63968800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:63967600-63989600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
34	chr7:63967800-63968800	Weak transcription	Adipose Nuclei	Adipose
35	chr7:63968000-63968800	Weak transcription	Fetal Lung	lung
36	chr7:63968600-63972000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:63968600-63972200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
38	chr7:63968800-63969200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr7:63968800-63970000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr7:63968800-63970400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr7:63968800-63970400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
42	chr7:63968800-63970400	ZNF genes & repeats	Fetal Lung	lung
43	chr7:63968800-63970400	ZNF genes & repeats	Ovary	ovary
44	chr7:63968800-63970600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr7:63968800-63970600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
46	chr7:63968800-63970600	ZNF genes & repeats	Adipose Nuclei	Adipose
47	chr7:63968800-63970600	ZNF genes & repeats	A549	lung
48	chr7:63968800-63971000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
49	chr7:63968800-63972000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
50	chr7:63968800-63972000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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