Variant report

Variant	esv3365431
Chromosome Location	chr19:23833862-23836260
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:100 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534761884	chr19:23833867-23833868	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs552684044	chr19:23833885-23833886	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs571272416	chr19:23833886-23833887	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs182714814	chr19:23833949-23833950	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs557705998	chr19:23833968-23833969	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs376605414	chr19:23833992-23833993	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs370452546	chr19:23834061-23834062	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs61193264	chr19:23834095-23834096	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs542834900	chr19:23834141-23834142	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs561549764	chr19:23834193-23834194	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs36012876	chr19:23834212-23834213	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs138815500	chr19:23834218-23834219	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs115795053	chr19:23834286-23834287	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs540733084	chr19:23834290-23834291	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs564892375	chr19:23834334-23834335	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs11881035	chr19:23834336-23834337	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs144481287	chr19:23834366-23834367	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs77238992	chr19:23834367-23834368	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs55873593	chr19:23834368-23834369	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs544869890	chr19:23834384-23834385	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs11881582	chr19:23834391-23834392	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs530862718	chr19:23834435-23834436	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs548900484	chr19:23834587-23834588	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs567492936	chr19:23834588-23834589	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs564858866	chr19:23834597-23834598	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs369336843	chr19:23834600-23834601	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs4556915	chr19:23834601-23834602	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs546677820	chr19:23834640-23834641	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs564393815	chr19:23834644-23834645	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs111241728	chr19:23834646-23834647	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs140575177	chr19:23834680-23834681	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs143703565	chr19:23834744-23834745	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs569548558	chr19:23834774-23834775	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs199595801	chr19:23834792-23834793	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs201008055	chr19:23834794-23834795	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs536995188	chr19:23834813-23834814	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs554826709	chr19:23834853-23834854	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs141070108	chr19:23834860-23834861	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs146474353	chr19:23834861-23834862	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs144908563	chr19:23834862-23834863	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs10637665	chr19:23834863-23834864	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs201493906	chr19:23834864-23834865	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs28624377	chr19:23834890-23834891	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs148125510	chr19:23835019-23835020	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs376705168	chr19:23835021-23835022	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs369061872	chr19:23835032-23835033	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs59956932	chr19:23835033-23835034	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs371144910	chr19:23835035-23835036	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs9676459	chr19:23835036-23835037	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs369457533	chr19:23835040-23835041	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:23828000-23838800	Weak transcription	Stomach Mucosa	stomach
2	chr19:23832200-23835600	Weak transcription	HSMM	muscle
3	chr19:23832600-23834200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:23832600-23835400	Weak transcription	Fetal Brain Male	brain
5	chr19:23832600-23865800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:23833000-23835200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr19:23833000-23835200	Weak transcription	Fetal Lung	lung
8	chr19:23833000-23836400	Weak transcription	Placenta	Placenta
9	chr19:23833000-23836600	Weak transcription	K562	blood
10	chr19:23833200-23836200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr19:23833400-23849800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr19:23833600-23834200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr19:23833600-23835200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr19:23833800-23835400	Weak transcription	Brain Hippocampus Middle	brain
15	chr19:23833800-23836400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr19:23833800-23849600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:23834000-23842600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr19:23834200-23834600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr19:23834400-23836000	Weak transcription	NH-A	brain
20	chr19:23834400-23836600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr19:23834600-23834800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr19:23834600-23839800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
23	chr19:23834600-23840800	Weak transcription	Brain Anterior Caudate	brain
24	chr19:23834800-23835400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr19:23834800-23836400	Weak transcription	Fetal Thymus	thymus
26	chr19:23834800-23836400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr19:23834800-23838000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr19:23835000-23835200	Weak transcription	Fetal Stomach	stomach
29	chr19:23835000-23836000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr19:23835000-23836600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr19:23835000-23846000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr19:23835200-23835400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr19:23835200-23835400	ZNF genes & repeats	Fetal Stomach	stomach
34	chr19:23835200-23836200	Weak transcription	Left Ventricle	heart
35	chr19:23835200-23838800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr19:23835200-23841400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr19:23835200-23842400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr19:23835200-23843000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr19:23835200-23843200	ZNF genes & repeats	Brain Germinal Matrix	brain
40	chr19:23835200-23845200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr19:23835200-23845600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr19:23835200-23846400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr19:23835200-23846600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr19:23835200-23847400	ZNF genes & repeats	Fetal Lung	lung
45	chr19:23835200-23849800	ZNF genes & repeats	Primary T cells from cord blood	blood
46	chr19:23835200-23850400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr19:23835200-23856600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
48	chr19:23835200-23857200	ZNF genes & repeats	Fetal Brain Female	brain
49	chr19:23835400-23836000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr19:23835400-23837200	Strong transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links