Variant report

Variant	esv3366323
Chromosome Location	chr10:1368982-1369702
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:82 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111779088	chr10:1368984-1368985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs568684816	chr10:1368985-1368986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs71379108	chr10:1369002-1369003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs12360067	chr10:1369015-1369016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs112993791	chr10:1369017-1369018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs113522540	chr10:1369020-1369021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs12358493	chr10:1369032-1369033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs369139203	chr10:1369035-1369036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs12358495	chr10:1369038-1369039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs529117873	chr10:1369049-1369050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs373849518	chr10:1369053-1369054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs2997720	chr10:1369056-1369057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs74200994	chr10:1369070-1369071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs372531168	chr10:1369071-1369072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs375598163	chr10:1369074-1369075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs368913490	chr10:1369085-1369086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs372988403	chr10:1369089-1369090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs377137103	chr10:1369092-1369093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs74207452	chr10:1369103-1369104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs74197788	chr10:1369107-1369108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs74187034	chr10:1369110-1369111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs375046602	chr10:1369125-1369126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs376971159	chr10:1369128-1369129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs71199936	chr10:1369142-1369143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs71494950	chr10:1369146-1369147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs376093761	chr10:1369161-1369162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs367839525	chr10:1369164-1369165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs371561609	chr10:1369179-1369180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs374092409	chr10:1369182-1369183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs35764063	chr10:1369197-1369198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs34205377	chr10:1369200-1369201	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs372057363	chr10:1369218-1369219	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs376304224	chr10:1369233-1369234	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs369864987	chr10:1369236-1369237	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs372341037	chr10:1369247-1369248	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs192317441	chr10:1369265-1369266	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs146505772	chr10:1369272-1369273	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs373025994	chr10:1369283-1369284	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs375305607	chr10:1369287-1369288	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs369321665	chr10:1369290-1369291	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs557820258	chr10:1369313-1369314	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs200602131	chr10:1369316-1369317	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs377680297	chr10:1369345-1369346	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs570136152	chr10:1369346-1369347	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs183758152	chr10:1369363-1369364	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs555852441	chr10:1369364-1369365	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs187574750	chr10:1369365-1369366	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs370967214	chr10:1369367-1369368	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs113187537	chr10:1369368-1369369	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs555614049	chr10:1369371-1369372	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Autism	22543975	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1354200-1369400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:1355000-1387800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:1358800-1369200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:1358800-1370200	Weak transcription	Fetal Brain Female	brain
5	chr10:1362600-1369200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:1364000-1369800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:1367400-1369600	Weak transcription	Gastric	stomach
8	chr10:1367600-1369200	Weak transcription	Pancreas	Pancrea
9	chr10:1367600-1369400	Weak transcription	Right Atrium	heart
10	chr10:1368600-1369800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:1368600-1370000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:1368600-1370400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:1369200-1370400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:1369200-1370400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:1369200-1370600	Enhancers	Pancreas	Pancrea
16	chr10:1369400-1370200	Strong transcription	Right Atrium	heart
17	chr10:1369400-1370400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
18	chr10:1369600-1370200	ZNF genes & repeats	Gastric	stomach

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