Variant report

Variant	esv3366490
Chromosome Location	chr9:86541369-86608868
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3172)
CpG islands
(count:1466)
Chromatin interactive
region (count:111)
LncRNA
region (count:2)
Mature miRNA
region (count: 2)
miRNA target
sites (count:2)

(count:3172 , 50 per page) page: 1 2 3 4 5 6 7 ... 64

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:86594976-86595467	K562	blood:	n/a	n/a
2	ARID3A	chr9:86574100-86574109	HepG2	liver:	n/a	n/a
3	ARID3A	chr9:86594551-86595923	HepG2	liver:	n/a	n/a
4	ARID3A	chr9:86596449-86596840	K562	blood:	n/a	n/a
5	ARID3A	chr9:86579582-86579944	K562	blood:	n/a	n/a
6	ARID3A	chr9:86601207-86602382	K562	blood:	n/a	n/a
7	ARID3A	chr9:86581470-86581472	HepG2	liver:	n/a	n/a
8	ARID3A	chr9:86571380-86571827	HepG2	liver:	n/a	n/a
9	ARID3A	chr9:86607253-86607942	HepG2	liver:	n/a	n/a
10	ARID3A	chr9:86597040-86597385	K562	blood:	n/a	n/a
11	ARID3A	chr9:86578453-86578585	HepG2	liver:	n/a	n/a
12	ARID3A	chr9:86597156-86597200	HepG2	liver:	n/a	n/a
13	ARID3A	chr9:86601213-86602730	HepG2	liver:	n/a	n/a
14	ARID3A	chr9:86607103-86607790	K562	blood:	n/a	n/a
15	ATF1	chr9:86597081-86597370	K562	blood:	n/a	n/a
16	ATF1	chr9:86594482-86595795	K562	blood:	n/a	n/a
17	ATF1	chr9:86579533-86579865	K562	blood:	n/a	n/a
18	ATF2	chr9:86594042-86596447	GM12878	blood:	n/a	n/a
19	ATF2	chr9:86579550-86580178	GM12878	blood:	n/a	n/a
20	ATF2	chr9:86594569-86595833	H1-hESC	embryonic stem cell:	n/a	n/a
21	ATF2	chr9:86579548-86580083	GM12878	blood:	n/a	n/a
22	ATF2	chr9:86580202-86581672	GM12878	blood:	n/a	n/a
23	ATF2	chr9:86595246-86595897	GM12878	blood:	n/a	n/a
24	ATF2	chr9:86581755-86582464	H1-hESC	embryonic stem cell:	n/a	n/a
25	ATF2	chr9:86580506-86581613	H1-hESC	embryonic stem cell:	n/a	n/a
26	ATF2	chr9:86594095-86595833	H1-hESC	embryonic stem cell:	n/a	n/a
27	ATF2	chr9:86594320-86594737	GM12878	blood:	n/a	n/a
28	ATF2	chr9:86580548-86581216	GM12878	blood:	n/a	n/a
29	ATF3	chr9:86594732-86595905	A549	lung:	n/a	chr9:86595872-86595881 chr9:86595620-86595629
30	ATF3	chr9:86595014-86595833	A549	lung:	n/a	chr9:86595620-86595629
31	ATF3	chr9:86577106-86577655	HCT-116	colon:	n/a	n/a
32	BACH1	chr9:86595351-86595999	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr9:86596582-86597119	K562	blood:	n/a	n/a
34	BACH1	chr9:86596642-86596737	H1-hESC	embryonic stem cell:	n/a	n/a
35	BATF	chr9:86547907-86548108	GM12878	blood:	n/a	n/a
36	BATF	chr9:86547853-86548109	GM12878	blood:	n/a	n/a
37	BATF	chr9:86595412-86595753	GM12878	blood:	n/a	n/a
38	BCL3	chr9:86580540-86581367	K562	blood:	n/a	n/a
39	BCL3	chr9:86579562-86580425	K562	blood:	n/a	n/a
40	BCL3	chr9:86580322-86582517	K562	blood:	n/a	n/a
41	BCL3	chr9:86579866-86580224	GM12878	blood:	n/a	n/a
42	BCL3	chr9:86594199-86595879	A549	lung:	n/a	chr9:86595732-86595741 chr9:86595085-86595094 chr9:86594760-86594769 chr9:86595086-86595099
43	BCL3	chr9:86580482-86581059	GM12878	blood:	n/a	n/a
44	BCL3	chr9:86580474-86581386	GM12878	blood:	n/a	n/a
45	BCL3	chr9:86579349-86579667	GM12878	blood:	n/a	n/a
46	BCL3	chr9:86580385-86581050	A549	lung:	n/a	n/a
47	BCL3	chr9:86579986-86580447	GM12878	blood:	n/a	n/a
48	BCL3	chr9:86594134-86596012	A549	lung:	n/a	chr9:86595732-86595741 chr9:86595085-86595094 chr9:86594760-86594769 chr9:86595086-86595099
49	BCL3	chr9:86579408-86581369	A549	lung:	n/a	n/a
50	BCL3	chr9:86579835-86580381	A549	lung:	n/a	n/a

(count:1466 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:86594416-86594466	HAEpiC	amniotic membrane:	n/a
2	chr9:86573761-86573811	GM12891	blood:	n/a
3	chr9:86594416-86594466	HAEpiC	amniotic membrane:	n/a
4	chr9:86573761-86573811	GM12891	blood:	n/a
5	chr9:86596124-86596174	T-47D	breast:	n/a
6	chr9:86572014-86572064	SK-N-MC	brain:	n/a
7	chr9:86594889-86594939	SAEC	small airway:	n/a
8	chr9:86596124-86596174	H1-hESC	embryonic stem cell:	embryo
9	chr9:86594889-86594939	AG09309	skin:	n/a
10	chr9:86571585-86571635	IMR90	lung:	fetal
11	chr9:86594214-86594264	RPTEC	kidney:	n/a
12	chr9:86594889-86594939	HEK293	kidney:	embryo
13	chr9:86596124-86596174	AG09319	gingival:	n/a
14	chr9:86590550-86590600	SK-N-SH_RA	brain:	n/a
15	chr9:86595264-86595314	BE2_C	brain:	n/a
16	chr9:86594226-86594276	AG04449	skin:	fetal
17	chr9:86594803-86594853	SAEC	small airway:	n/a
18	chr9:86594226-86594276	ECC-1	luminal epithelium:	n/a
19	chr9:86594091-86594141	PrEC	prostate:	n/a
20	chr9:86595264-86595314	PANC-1	pancreas:	n/a
21	chr9:86597173-86597223	HUVEC	blood vessel:	n/a
22	chr9:86594091-86594141	RPTEC	kidney:	n/a
23	chr9:86595151-86595201	GM12891	blood:	n/a
24	chr9:86594803-86594853	GM06990	blood:	n/a
25	chr9:86595264-86595314	HCM	heart:	n/a
26	chr9:86594889-86594939	GM12878	blood:	n/a
27	chr9:86595452-86595502	HCF	heart:	n/a
28	chr9:86573761-86573811	MCF-7	breast:	n/a
29	chr9:86597173-86597223	K562	blood:	n/a
30	chr9:86595264-86595314	H1-hESC	embryonic stem cell:	embryo
31	chr9:86594226-86594276	Caco-2	colon:	n/a
32	chr9:86595252-86595302	HL-60	blood:	n/a
33	chr9:86571409-86571459	HRE	kidney:	n/a
34	chr9:86595452-86595502	NHBE	bronchial:	n/a
35	chr9:86596124-86596174	MCF10A-Er-Src	breast:	n/a
36	chr9:86594416-86594466	BE2_C	brain:	n/a
37	chr9:86596281-86596331	NHDF-neo	bronchial:	n/a
38	chr9:86596124-86596174	BE2_C	brain:	n/a
39	chr9:86571585-86571635	BJ	skin:	n/a
40	chr9:86590550-86590600	GM12892	blood:	n/a
41	chr9:86596281-86596331	HRPEpiC	eye:	n/a
42	chr9:86567743-86567793	AG09309	skin:	n/a
43	chr9:86595452-86595502	GM06990	blood:	n/a
44	chr9:86590550-86590600	HNPCEpiC	eye:	n/a
45	chr9:86571409-86571459	Hepatocyte	liver:	n/a
46	chr9:86571814-86571864	PrEC	prostate:	n/a
47	chr9:86573761-86573811	PANC-1	pancreas:	n/a
48	chr9:86595264-86595314	NT2-D1	testis:	n/a
49	chr9:86571432-86571482	Caco-2	colon:	n/a
50	chr9:86571409-86571459	HMEC	breast:	n/a

(count:111 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr9:86534561..86538761-chr9:86547777..86551990,5	MCF-7	breast:
2	chr9:86601005..86603787-chr9:86605588..86607387,3	K562	blood:
3	chr11:94799931..94800625-chr9:86595070..86595772,2	Hela-S3	cervix:
4	chr17:71307579..71308450-chr9:86595541..86596511,2	Hela-S3	cervix:
5	chr7:35840834..35841579-chr9:86595754..86596267,2	Hela-S3	cervix:
6	chr9:86593982..86596635-chr9:88968626..88970254,2	MCF-7	breast:
7	chr9:86543303..86546156-chr9:86594809..86597216,2	K562	blood:
8	chr9:86599801..86602585-chr9:86615309..86617946,2	K562	blood:
9	chr9:86544458..86547106-chr9:86589351..86591605,3	K562	blood:
10	chr9:86594678..86596625-chr9:86954974..86956986,2	MCF-7	breast:
11	chr9:86321564..86323208-chr9:86572109..86574436,2	MCF-7	breast:
12	chr9:86606757..86607612-chr9:86787689..86788310,2	MCF-7	breast:
13	chr9:86593375..86596264-chr9:101558546..101560057,2	MCF-7	breast:
14	chr20:30192630..30193506-chr9:86594310..86595123,2	Hela-S3	cervix:
15	chr9:86561645..86563612-chr9:86594555..86596170,2	MCF-7	breast:
16	chr3:184080676..184081504-chr9:86595141..86595996,2	NB4	blood:
17	chr9:86562055..86565176-chr9:86569672..86571834,3	MCF-7	breast:
18	chr9:86545280..86547707-chr9:86930734..86934388,3	MCF-7	breast:
19	chr9:86561198..86563897-chr9:86600302..86603108,2	MCF-7	breast:
20	chr9:86550607..86552795-chr9:86930808..86933198,2	MCF-7	breast:
21	chr9:86600023..86602701-chr9:86605294..86607803,3	MCF-7	breast:
22	chr1:167904971..167905698-chr9:86571060..86571726,2	Hela-S3	cervix:
23	chr9:86534503..86538702-chr9:86568820..86574555,7	MCF-7	breast:
24	chr12:46766121..46766688-chr9:86595377..86596150,2	Hela-S3	cervix:
25	chr3:73159959..73160592-chr9:86571618..86572404,2	Hela-S3	cervix:
26	chr9:86599996..86602953-chr9:86874625..86876335,2	MCF-7	breast:
27	chr9:86549593..86551703-chr9:86556254..86557805,2	MCF-7	breast:
28	chr9:86552456..86553547-chr9:86875355..86876622,8	MCF-7	breast:
29	chr1:45186975..45187766-chr9:86595552..86596531,2	Hela-S3	cervix:
30	chr9:86552635..86553455-chr9:86929530..86930770,4	MCF-7	breast:
31	chr9:86569929..86574114-chr9:86574225..86577710,5	MCF-7	breast:
32	chr10:90639734..90640291-chr9:86595257..86596036,2	Hela-S3	cervix:
33	chr9:86534003..86537844-chr9:86570557..86574103,8	K562	blood:
34	chr9:86533979..86537502-chr9:86594012..86596999,11	MCF-7	breast:
35	chr9:86551370..86553240-chr9:86557554..86559080,2	MCF-7	breast:
36	chr9:86593378..86594996-chr9:86858039..86859653,2	MCF-7	breast:
37	chr9:86566551..86568592-chr9:86569030..86570936,2	K562	blood:
38	chr9:86592736..86597542-chr9:86606160..86610925,6	K562	blood:
39	chr9:86596431..86597964-chr9:86790384..86792267,2	MCF-7	breast:
40	chr9:86536152..86538297-chr9:86540828..86543846,3	MCF-7	breast:
41	chr9:86552562..86553446-chr9:86787709..86788677,4	K562	blood:
42	chr9:86552677..86553242-chr9:86929937..86930812,2	K562	blood:
43	chr9:86601005..86603787-chr9:86605588..86607387,3	K562	blood:
44	chr18:12376849..12377806-chr9:86594670..86595620,2	Hela-S3	cervix:
45	chr9:86601633..86604619-chr9:86768972..86770612,2	K562	blood:
46	chr9:86552479..86553254-chr9:86875743..86876720,3	K562	blood:
47	chr16:776639..778399-chr9:86594223..86596178,2	MCF-7	breast:
48	chr9:86551370..86553240-chr9:86557554..86559080,2	MCF-7	breast:
49	chr9:86542024..86543859-chr9:86595135..86597329,2	MCF-7	breast:
50	chr9:86553744..86556309-chr9:86594734..86597162,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RMI1-1	chr9:86587148-86587192	ENSG00000235298.1
2	lnc-RMI1-1	chr9:86590348-86590692	ENSG00000235298.1

miRNA name	Chromosome Location	mirBase accession
hsa-miR-7-5p	chr9:86584727-86584749	MIMAT0000252_2
hsa-miR-7-1-3p	chr9:86584686-86584707	MIMAT0004553

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	HNRNPK	hsa-miR-30c-5p	chr9:86584206-86584228
2	HNRNPK	hsa-miR-21-5p	chr9:86583583-86583604

Variant related genes	Relation type
C9orf64	TF binding region
MIR7-1	TF binding region
RMI1	TF binding region
ENSG00000202523	TF binding region
HNRNPK	TF binding region
ENSG00000235298	TF binding region
C9orf64	CpG island
MIR7-1	CpG island
RMI1	CpG island
ENSG00000202523	CpG island
HNRNPK	CpG island
ENSG00000235298	CpG island
ENSG00000197506	chromatin interactions
ENSG00000111678	chromatin interactions
ENSG00000237649	chromatin interactions
ENSG00000243660	chromatin interactions
ENSG00000226471	chromatin interactions
ENSG00000173548	chromatin interactions
ENSG00000163584	chromatin interactions
ENSG00000147488	chromatin interactions
ENSG00000202523	chromatin interactions
ENSG00000113575	chromatin interactions
ENSG00000135018	chromatin interactions
ENSG00000179523	chromatin interactions
ENSG00000178966	chromatin interactions
ENSG00000165115	chromatin interactions
ENSG00000175183	chromatin interactions
ENSG00000124164	chromatin interactions
ENSG00000134294	chromatin interactions
ENSG00000177463	chromatin interactions
ENSG00000166441	chromatin interactions
ENSG00000214756	chromatin interactions
ENSG00000229117	chromatin interactions
ENSG00000066933	chromatin interactions
ENSG00000177971	chromatin interactions
ENSG00000265692	chromatin interactions
ENSG00000138134	chromatin interactions
ENSG00000103253	chromatin interactions
ENSG00000180771	chromatin interactions
ENSG00000141385	chromatin interactions
ENSG00000148057	chromatin interactions
ENSG00000179604	chromatin interactions
ENSG00000100219	chromatin interactions
ENSG00000141140	chromatin interactions
ENSG00000225733	chromatin interactions
ENSG00000199377	chromatin interactions
ENSG00000254473	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000105939	chromatin interactions
ENSG00000228393	chromatin interactions
ENSG00000105538	chromatin interactions
ENSG00000238923	chromatin interactions
ENSG00000055044	chromatin interactions
ENSG00000236514	chromatin interactions
ENSG00000125968	chromatin interactions
ENSG00000163882	chromatin interactions
ENSG00000166192	chromatin interactions
ENSG00000165138	chromatin interactions
ENSG00000162004	chromatin interactions
ENSG00000134852	chromatin interactions
ENSG00000165118	chromatin interactions
ENSG00000271885	chromatin interactions
ENSG00000184886	chromatin interactions
ENSG00000165119	chromatin interactions
ENSG00000198105	chromatin interactions
ENSG00000083223	chromatin interactions
ENSG00000174444	chromatin interactions
ENSG00000062716	chromatin interactions
ENSG00000143164	chromatin interactions
ENSG00000241685	chromatin interactions
ENSG00000223247	chromatin interactions
ENSG00000206597	chromatin interactions
ENSG00000179119	chromatin interactions
ENSG00000174442	chromatin interactions
ENSG00000143158	chromatin interactions
CDC5L	Mature miRNA region
TBC1D1	Mature miRNA region
SMS	Mature miRNA region
CIRH1A	Mature miRNA region
CTC1	Mature miRNA region
HUWE1	Mature miRNA region
ZNF792	Mature miRNA region

Extended variants
information (count: 2653 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:2653 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs143321644	chr9:86541418-86541419	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs187908563	chr9:86541426-86541427	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs369707022	chr9:86541452-86541453	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs192434040	chr9:86541569-86541570	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs568414486	chr9:86541617-86541618	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs563222839	chr9:86541662-86541663	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs77042208	chr9:86541671-86541672	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs542452581	chr9:86541696-86541697	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs560526417	chr9:86541700-86541701	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs142598663	chr9:86541772-86541773	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs552571326	chr9:86541773-86541774	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs570743659	chr9:86541776-86541777	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs184599498	chr9:86541828-86541829	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs549805487	chr9:86541829-86541830	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs151015928	chr9:86541835-86541836	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs370832496	chr9:86541867-86541868	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs535230123	chr9:86541937-86541938	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs142225353	chr9:86541948-86541949	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs7854432	chr9:86541982-86541983	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs539162472	chr9:86542084-86542085	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs377327865	chr9:86542103-86542104	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs551277875	chr9:86542104-86542105	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs557868378	chr9:86542122-86542123	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs575925364	chr9:86542129-86542130	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs147887381	chr9:86542130-86542131	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs556539455	chr9:86542139-86542140	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs141539512	chr9:86542166-86542167	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs188607039	chr9:86542185-86542186	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs34499467	chr9:86542190-86542191	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs11140298	chr9:86542206-86542207	Weak transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs75729706	chr9:86542209-86542210	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs371738247	chr9:86542215-86542216	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs373085954	chr9:86542222-86542223	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs564871604	chr9:86542225-86542226	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs527274491	chr9:86542226-86542227	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs7854496	chr9:86542243-86542244	Weak transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs35903350	chr9:86542244-86542245	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs386415310	chr9:86542245-86542246	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs397689548	chr9:86542246-86542247	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs35655006	chr9:86542258-86542259	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs531600579	chr9:86542285-86542286	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs529988032	chr9:86542340-86542341	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs550156298	chr9:86542377-86542378	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs568215568	chr9:86542467-86542468	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs529169592	chr9:86542473-86542474	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs76738703	chr9:86542562-86542563	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs541801098	chr9:86542580-86542581	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs4480186	chr9:86542608-86542609	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
49	rs551183862	chr9:86542632-86542633	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs569771738	chr9:86542669-86542670	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Urothelial cell carcinoma	18451213	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Renal cell carcinoma	18765545	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:2515 , 50 per page) page: 1 2 3 4 5 6 7 ... 51

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86536600-86571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:86537000-86543800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:86537000-86553600	Weak transcription	Fetal Intestine Small	intestine
4	chr9:86537000-86553600	Weak transcription	Thymus	Thymus
5	chr9:86537200-86545600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:86537800-86542600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:86542000-86546400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:86542600-86543000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr9:86542800-86543000	Enhancers	Esophagus	oesophagus
10	chr9:86543000-86545400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:86543000-86547000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr9:86543000-86571000	Weak transcription	Esophagus	oesophagus
13	chr9:86543400-86543600	Enhancers	Lung	lung
14	chr9:86543800-86544000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
15	chr9:86544000-86552400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr9:86545400-86550400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr9:86545600-86547400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:86545800-86548000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:86546000-86547800	Enhancers	Dnd41	blood
20	chr9:86546000-86548000	Enhancers	Hela-S3	cervix
21	chr9:86546000-86548600	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr9:86546200-86546400	Enhancers	GM12878-XiMat	blood
23	chr9:86546200-86547400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:86546200-86547400	Enhancers	NHEK	skin
25	chr9:86546400-86546600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:86546400-86546800	Enhancers	Fetal Thymus	thymus
27	chr9:86546400-86547200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:86546400-86547200	Enhancers	Primary T cells from cord blood	blood
29	chr9:86546400-86547200	Enhancers	Primary hematopoietic stem cells	blood
30	chr9:86546400-86547200	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr9:86546400-86547200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr9:86546400-86547200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:86546400-86547400	Weak transcription	GM12878-XiMat	blood
34	chr9:86546400-86550400	Enhancers	Placenta	Placenta
35	chr9:86546600-86546800	Enhancers	Primary T cells fromperipheralblood	blood
36	chr9:86546600-86547200	Enhancers	HMEC	breast
37	chr9:86546600-86548600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr9:86546800-86553400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr9:86546800-86553600	Weak transcription	Fetal Thymus	thymus
40	chr9:86547000-86547200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr9:86547000-86548600	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr9:86547200-86548000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:86547200-86548600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr9:86547200-86548600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:86547200-86548600	Weak transcription	HMEC	breast
46	chr9:86547200-86549000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr9:86547200-86553600	Weak transcription	Primary T cells from cord blood	blood
48	chr9:86547200-86553800	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr9:86547200-86570200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr9:86547400-86548000	Enhancers	GM12878-XiMat	blood

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