Variant report

Variant	esv3366519
Chromosome Location	chrX:154963291-155133665
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chrX:154975527-154975836	K562	blood:	n/a	n/a
2	ARID3A	chrX:154996976-154997295	K562	blood:	n/a	n/a
3	ATF2	chrX:155106295-155106691	GM12878	blood:	n/a	n/a
4	ATF2	chrX:155110700-155111118	GM12878	blood:	n/a	n/a
5	ATF3	chrX:155117896-155118116	K562	blood:	n/a	n/a
6	ATF3	chrX:155110793-155111031	K562	blood:	n/a	n/a
7	ATF3	chrX:155117821-155118206	K562	blood:	n/a	n/a
8	ATF3	chrX:155049878-155050047	K562	blood:	n/a	n/a
9	ATF3	chrX:155049846-155050087	K562	blood:	n/a	n/a
10	ATF3	chrX:155049810-155050080	H1-hESC	embryonic stem cell:	n/a	n/a
11	BCLAF1	chrX:155110613-155111149	GM12878	blood:	n/a	chrX:155111130-155111143
12	BCLAF1	chrX:155110620-155111034	GM12878	blood:	n/a	n/a
13	BHLHE40	chrX:154997079-154997133	K562	blood:	n/a	n/a
14	BHLHE40	chrX:154975442-154975772	K562	blood:	n/a	n/a
15	BHLHE40	chrX:154974371-154974416	K562	blood:	n/a	n/a
16	BRCA1	chrX:154996864-154997304	Hela-S3	cervix:	n/a	n/a
17	CBX3	chrX:155117729-155118210	HCT-116	colon:	n/a	n/a
18	CBX3	chrX:155117763-155118332	HCT-116	colon:	n/a	n/a
19	CBX3	chrX:155110478-155111375	K562	blood:	n/a	n/a
20	CBX3	chrX:154970062-154970345	K562	blood:	n/a	n/a
21	CBX3	chrX:155097539-155097798	K562	blood:	n/a	n/a
22	CBX3	chrX:155097474-155097882	K562	blood:	n/a	n/a
23	CEBPB	chrX:154975317-154975850	Hela-S3	cervix:	n/a	n/a
24	CEBPB	chrX:154998121-154998506	MCF-7	breast:	n/a	chrX:154998258-154998271 chrX:154998258-154998269
25	CEBPB	chrX:154998136-154998445	HepG2	liver:	n/a	chrX:154998258-154998271 chrX:154998258-154998269
26	CEBPB	chrX:154998099-154998478	IMR90	lung:	n/a	chrX:154998258-154998271 chrX:154998258-154998269
27	CEBPB	chrX:155008503-155008956	MCF-7	breast:	n/a	n/a
28	CEBPB	chrX:154998108-154998472	Hela-S3	cervix:	n/a	chrX:154998258-154998271 chrX:154998258-154998269
29	CEBPB	chrX:154996928-154997103	IMR90	lung:	n/a	n/a
30	CEBPB	chrX:154996507-154997170	Hela-S3	cervix:	n/a	n/a
31	CEBPB	chrX:154977282-154977613	ECC-1	luminal epithelium:	n/a	n/a
32	CEBPB	chrX:154998078-154998477	A549	lung:	n/a	chrX:154998258-154998271 chrX:154998258-154998269
33	CEBPB	chrX:154977178-154977591	Hela-S3	cervix:	n/a	n/a
34	CEBPB	chrX:154977314-154977417	K562	blood:	n/a	n/a
35	CEBPB	chrX:154977169-154977580	ECC-1	luminal epithelium:	n/a	n/a
36	CEBPB	chrX:155008478-155008899	MCF-7	breast:	n/a	n/a
37	CEBPB	chrX:155049796-155050155	MCF-7	breast:	n/a	n/a
38	CEBPD	chrX:155110955-155111174	HepG2	liver:	n/a	n/a
39	CHD2	chrX:154996669-154997437	Hela-S3	cervix:	n/a	chrX:154996886-154996896
40	CHD2	chrX:154996956-154997273	K562	blood:	n/a	n/a
41	CHD2	chrX:154997004-154997475	H1-hESC	embryonic stem cell:	n/a	n/a
42	CHD2	chrX:154975613-154975743	K562	blood:	n/a	n/a
43	CREB1	chrX:155110547-155111661	HepG2	liver:	n/a	chrX:155111461-155111474
44	CREB1	chrX:155102854-155103248	K562	blood:	n/a	n/a
45	CREB1	chrX:155110661-155111229	A549	lung:	n/a	n/a
46	CREB1	chrX:155110647-155111682	GM12878	blood:	n/a	chrX:155111461-155111474
47	CREB1	chrX:155110706-155111718	H1-hESC	embryonic stem cell:	n/a	chrX:155111461-155111474
48	CREB1	chrX:155110616-155111646	K562	blood:	n/a	chrX:155111461-155111474
49	CREB1	chrX:155110712-155111544	HepG2	liver:	n/a	chrX:155111461-155111474
50	CREB1	chrX:155102863-155103160	H1-hESC	embryonic stem cell:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMLHE-3	chrX:155058248-155059239	NONHSAT139246
2	lnc-VAMP7-2	chrX:155105299-155105548	NONHSAT139247

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	SPRY3	hsa-miR-320a	chrX:155004589-155004612

Variant related genes	Relation type
AMDP1	TF binding region
VAMP7	TF binding region
SPRY3	TF binding region
DPH3P2	TF binding region

Extended variants
information (count: 1132 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:1132 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182514742	chrX:154963295-154963296	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs28890794	chrX:154963309-154963310	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs187510126	chrX:154963315-154963316	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs553369	chrX:154963439-154963440	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs9657866	chrX:154963459-154963460	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs306906	chrX:154963517-154963518	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs190426287	chrX:154963681-154963682	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs371629521	chrX:154963766-154963767	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs183370420	chrX:154963801-154963802	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs189136420	chrX:154963877-154963878	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs113950916	chrX:154969002-154969003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs184936074	chrX:154969008-154969009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs188573525	chrX:154969022-154969023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs306903	chrX:154969038-154969039	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs187166068	chrX:154969074-154969075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs191554151	chrX:154969091-154969092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs111316138	chrX:154969104-154969105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs184193371	chrX:154969237-154969238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs186370026	chrX:154969274-154969275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs149571257	chrX:154969311-154969312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs190927644	chrX:154969428-154969429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs306902	chrX:154969627-154969628	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs182351129	chrX:154969700-154969701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs186606165	chrX:154969722-154969723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs148756176	chrX:154969806-154969807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs193002882	chrX:154969859-154969860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs182959888	chrX:154970219-154970220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs370818882	chrX:154970355-154970356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs306901	chrX:154970447-154970448	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs188793192	chrX:154970474-154970475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs192855129	chrX:154970478-154970479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs185156631	chrX:154970496-154970497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs189378116	chrX:154970582-154970583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs552158555	chrX:154970606-154970607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs192325962	chrX:154970636-154970637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs183637518	chrX:154970637-154970638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs188149115	chrX:154970682-154970683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs4436304	chrX:154970775-154970776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs371080523	chrX:154970780-154970781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs28794784	chrX:154970785-154970786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs114498992	chrX:154970799-154970800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs145522331	chrX:154971181-154971182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs181582050	chrX:154971309-154971310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs186304688	chrX:154971317-154971318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs147753036	chrX:154971336-154971337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs190352243	chrX:154971417-154971418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs306900	chrX:154971425-154971426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs36071354	chrX:154971435-154971436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs181808341	chrX:154971519-154971520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs185965678	chrX:154971659-154971660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:1)

Disease	PMID	Source
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:1389 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154963200-154963400	Enhancers	Aorta	Aorta
2	chrX:154963400-154963800	Enhancers	Stomach Mucosa	stomach
3	chrX:154963400-154964000	Weak transcription	Aorta	Aorta
4	chrX:154963600-154964000	Enhancers	H1 Cell Line	embryonic stem cell
5	chrX:154969000-154973000	Weak transcription	Psoas Muscle	Psoas
6	chrX:154969000-154974000	Weak transcription	Aorta	Aorta
7	chrX:154973000-154973200	Enhancers	Psoas Muscle	Psoas
8	chrX:154973000-154974400	Enhancers	Ovary	ovary
9	chrX:154973200-154974000	Weak transcription	Psoas Muscle	Psoas
10	chrX:154973600-154973800	Enhancers	Fetal Intestine Large	intestine
11	chrX:154973600-154974200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chrX:154973600-154974200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chrX:154973600-154974400	Enhancers	Left Ventricle	heart
14	chrX:154973600-154975400	Enhancers	Stomach Mucosa	stomach
15	chrX:154973800-154974000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chrX:154973800-154974400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chrX:154973800-154974600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chrX:154973800-154974800	Weak transcription	Fetal Intestine Large	intestine
19	chrX:154973800-154975200	Enhancers	Right Atrium	heart
20	chrX:154974000-154974200	Enhancers	Fetal Lung	lung
21	chrX:154974000-154974400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chrX:154974000-154974400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chrX:154974000-154974400	Flanking Active TSS	Aorta	Aorta
24	chrX:154974000-154974400	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chrX:154974000-154974400	Active TSS	Rectal Mucosa Donor 29	rectum
26	chrX:154974000-154974400	Active TSS	Rectal Smooth Muscle	rectum
27	chrX:154974000-154974400	Active TSS	Skeletal Muscle Male	skeletal muscle
28	chrX:154974000-154974600	Enhancers	Psoas Muscle	Psoas
29	chrX:154974000-154974600	Active TSS	Stomach Smooth Muscle	stomach
30	chrX:154974000-154978000	Enhancers	Hela-S3	cervix
31	chrX:154974200-154974400	Enhancers	Brain Anterior Caudate	brain
32	chrX:154974200-154985000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chrX:154974400-154974600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chrX:154974400-154974600	Enhancers	Aorta	Aorta
35	chrX:154974400-154975000	Weak transcription	Left Ventricle	heart
36	chrX:154974400-154975400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chrX:154974400-154975800	Enhancers	Fetal Heart	heart
38	chrX:154974400-154976400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chrX:154974400-154976600	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chrX:154974400-154985000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chrX:154974600-154974800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chrX:154974600-154975000	Weak transcription	Psoas Muscle	Psoas
43	chrX:154974600-154975400	Weak transcription	Aorta	Aorta
44	chrX:154974600-154975800	Enhancers	Adipose Nuclei	Adipose
45	chrX:154974800-154975800	Enhancers	Duodenum Mucosa	Duodenum
46	chrX:154974800-154975800	Enhancers	Fetal Intestine Large	intestine
47	chrX:154974800-154977200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chrX:154975000-154975200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chrX:154975000-154975200	Enhancers	Psoas Muscle	Psoas
50	chrX:154975000-154975800	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links