Variant report

Variant	esv3366769
Chromosome Location	chr5:14346079-14348744
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14346102..14348503-chr5:14664203..14665893,2	MCF-7	breast:
2	chr5:14342477..14345158-chr5:14346178..14348281,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154124	chromatin interactions
ENSG00000261360	chromatin interactions

Extended variants
information (count: 113 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:113 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs530262840	chr5:14346099-14346100	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs143856831	chr5:14346101-14346102	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs115311017	chr5:14346113-14346114	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs566524093	chr5:14346142-14346143	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs35331187	chr5:14346171-14346172	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs62344980	chr5:14346196-14346197	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs553569112	chr5:14346248-14346249	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs371388245	chr5:14346252-14346253	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs142316998	chr5:14346268-14346269	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs570479446	chr5:14346278-14346279	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs537914688	chr5:14346307-14346308	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs111390117	chr5:14346398-14346399	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs556322723	chr5:14346405-14346406	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs4702029	chr5:14346413-14346414	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
15	rs368670042	chr5:14346453-14346454	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs565141098	chr5:14346476-14346477	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs554033057	chr5:14346483-14346484	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs114835167	chr5:14346489-14346490	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs146859814	chr5:14346502-14346503	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs207465624	chr5:14346583-14346584	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs191923606	chr5:14346741-14346742	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs79498375	chr5:14346749-14346750	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs544282742	chr5:14346764-14346765	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs562879459	chr5:14346796-14346797	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs530309266	chr5:14346808-14346809	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs116278284	chr5:14346827-14346828	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs140663035	chr5:14346836-14346837	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs576962996	chr5:14346880-14346881	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs560749013	chr5:14346918-14346919	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs527958891	chr5:14346922-14346923	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs552928000	chr5:14346935-14346936	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs60738268	chr5:14346936-14346937	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs537876026	chr5:14346940-14346941	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs142900352	chr5:14346949-14346950	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs183655261	chr5:14346950-14346951	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs367975948	chr5:14346952-14346953	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs113088430	chr5:14346962-14346963	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs553650735	chr5:14347034-14347035	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs376706942	chr5:14347043-14347044	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs111845070	chr5:14347062-14347063	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs545745764	chr5:14347071-14347072	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs576816537	chr5:14347110-14347111	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs78672689	chr5:14347115-14347116	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs28415805	chr5:14347144-14347145	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs562901697	chr5:14347167-14347168	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs112690451	chr5:14347176-14347177	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs13156963	chr5:14347195-14347196	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs56171380	chr5:14347220-14347221	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs111645567	chr5:14347227-14347228	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs28609080	chr5:14347251-14347252	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Cervical squamous cell carcinoma	21590768	CNVD
abnormal development	18461090	CNVD
Lung cancer	19547694	CNVD
Cri-du chat syndrome	22283845	CNVD
Disorders of sex development	21048976	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Honadal dysgenesis	21048976	CNVD
Cancer	16751803	CNVD
Breast cancer	17133270	CNVD
Hepatocellular carcinoma	22174799	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Salivary gland tumor	18059337	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Kartagener syndrome	16639409	CNVD
Medulloblastoma	21979893	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Multiple myeloma	17550852	CNVD
prenatal diagnosis	22389664	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	16608533	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Intellectual disability	22102821	CNVD
Myelofibrosis	22110671	CNVD
Cri-du chat syndrome	16773131	CNVD
Cryptorchidism	21048976	CNVD
Glioblastoma multiforme	22286061	CNVD
Cervical cancer	16585170	CNVD
Mental retardation	16773131	CNVD
Non-small cell lung cancer	21829676	CNVD
Cri-du chat syndrome	22470819	CNVD
sporadic birth defects	19047251	CNVD
Breast cancer	21364760	CNVD
Non-small cell lung cancer	17643093	CNVD
Renal cell carcinoma	18765545	CNVD
Schizophrenia	18940311	CNVD
Central neurocytomas	17123091	CNVD
Mental retardation	17847001	CNVD
Neurocytoma	17123091	CNVD
Mental retardation	19546859	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Williams Syndrome	20824207	CNVD
Intracranial aneurysm	16715129	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:187 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14319200-14349400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:14326800-14346400	Weak transcription	Fetal Kidney	kidney
3	chr5:14331000-14348000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:14331400-14350000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:14334000-14349400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:14335000-14360600	Weak transcription	Psoas Muscle	Psoas
7	chr5:14335200-14348600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:14336400-14349400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:14337800-14346600	Weak transcription	Fetal Heart	heart
10	chr5:14338000-14357200	Weak transcription	Colonic Mucosa	Colon
11	chr5:14338400-14358000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:14338600-14348000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:14338800-14347000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr5:14338800-14357600	Weak transcription	Esophagus	oesophagus
15	chr5:14339000-14346400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr5:14339200-14357600	Weak transcription	Gastric	stomach
17	chr5:14339200-14358000	Weak transcription	Thymus	Thymus
18	chr5:14339200-14358200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr5:14339400-14358400	Weak transcription	Fetal Thymus	thymus
20	chr5:14339800-14348800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:14340000-14347000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:14340400-14353800	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr5:14340800-14353600	Strong transcription	HSMM	muscle
24	chr5:14341200-14350400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:14341400-14355000	Weak transcription	Ovary	ovary
26	chr5:14341400-14359400	Weak transcription	Primary T cells from cord blood	blood
27	chr5:14341600-14347400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:14341600-14348600	Weak transcription	Aorta	Aorta
29	chr5:14341600-14357400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr5:14342400-14347600	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:14342600-14346200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr5:14342600-14346400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr5:14342600-14346400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr5:14342600-14357200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr5:14342600-14358200	Weak transcription	Pancreas	Pancrea
36	chr5:14342800-14346200	Weak transcription	Fetal Stomach	stomach
37	chr5:14342800-14346600	Weak transcription	Fetal Intestine Small	intestine
38	chr5:14342800-14347600	Weak transcription	Stomach Mucosa	stomach
39	chr5:14342800-14348400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr5:14342800-14348600	Weak transcription	Spleen	Spleen
41	chr5:14342800-14350000	Weak transcription	Brain Germinal Matrix	brain
42	chr5:14342800-14351000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr5:14342800-14351600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:14342800-14352000	Strong transcription	Osteobl	bone
45	chr5:14342800-14352200	Strong transcription	NH-A	brain
46	chr5:14342800-14354000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr5:14342800-14355000	Weak transcription	Right Ventricle	heart
48	chr5:14342800-14357200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr5:14342800-14357200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr5:14342800-14365200	Weak transcription	Small Intestine	intestine

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