Variant report

Variant	esv3366971
Chromosome Location	chr15:73189999-73191947
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NEO1-3	chr15:73191422-73192693	NONHSAT047129
2	lnc-ADPGK-3	chr15:73191740-73192601	NONHSAT047131
3	lnc-ADPGK-3	chr15:73191425-73192691	NONHSAT047130

Extended variants
information (count: 66 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:66 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555360555	chr15:73190088-73190089	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs143713131	chr15:73190132-73190133	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs149408312	chr15:73190143-73190144	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs62017651	chr15:73190155-73190156	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs187356205	chr15:73190161-73190162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs56264189	chr15:73190169-73190170	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs545627772	chr15:73190194-73190195	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs189386740	chr15:73190219-73190220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs572998668	chr15:73190244-73190245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs540359587	chr15:73190253-73190254	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs561512979	chr15:73190289-73190290	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs528922177	chr15:73190312-73190313	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs181836222	chr15:73190322-73190323	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs562801704	chr15:73190345-73190346	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs76885993	chr15:73190350-73190351	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs144764986	chr15:73190403-73190404	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs55993792	chr15:73190409-73190410	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs148535265	chr15:73190453-73190454	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201201043	chr15:73190684-73190685	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554223755	chr15:73190769-73190770	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs558393561	chr15:73190847-73190848	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs372488413	chr15:73190857-73190858	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs6495027	chr15:73190858-73190859	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs71904737	chr15:73190901-73190902	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs66910869	chr15:73190912-73190913	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs398043510	chr15:73190916-73190917	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200679933	chr15:73190988-73190989	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs147830469	chr15:73190990-73190991	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs149872482	chr15:73191000-73191001	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs185383608	chr15:73191005-73191006	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs189692494	chr15:73191064-73191065	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs28542836	chr15:73191069-73191070	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs147256842	chr15:73191107-73191108	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs139979130	chr15:73191196-73191197	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs76360665	chr15:73191206-73191207	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs143435329	chr15:73191236-73191237	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs12902504	chr15:73191258-73191259	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs181296760	chr15:73191264-73191265	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs79499981	chr15:73191319-73191320	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs186545879	chr15:73191330-73191331	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs369518410	chr15:73191355-73191356	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs113207657	chr15:73191364-73191365	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs539211001	chr15:73191366-73191367	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs74021554	chr15:73191373-73191374	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs556690618	chr15:73191404-73191405	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs191739971	chr15:73191412-73191413	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs540319625	chr15:73191451-73191452	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs561865990	chr15:73191636-73191637	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs539784045	chr15:73191690-73191691	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs573508272	chr15:73191727-73191728	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Prostate cancer	16573809	CNVD
Autism	17322880	CNVD
phobic disorder	16773131	CNVD
Autism	21480499	CNVD
Disorders of sex development	22290220	CNVD
Mental retardation	19951919	CNVD
Mental retardation	16773131	CNVD
T-cell lymphomas	19863542	CNVD
15q24 microdeletion syndrome	22180641	CNVD
15q24 microdeletion syndrome	19921647	CNVD
Disease	22216833	CNVD
Mental retardation	17360722	CNVD
15q24 microdeletion syndrome	22216833	CNVD
15q24 microdeletion syndrome	22283845	CNVD
Developmental delay	17932688	CNVD
craniofacial dysmorphism	17932688	CNVD
digital and genital abnormalities	17932688	CNVD
Mental retardation	17621639	CNVD
Autism	20808228	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD
Epilepsy	22083797	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	20067559	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73188600-73190200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:73190200-73190400	Enhancers	Aorta	Aorta
3	chr15:73190400-73192200	Weak transcription	Aorta	Aorta
4	chr15:73190400-73194000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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