Variant report

Variant	esv3367329
Chromosome Location	chr6:13573423-13576971
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1089)
CpG islands
(count:734)
Chromatin interactive
region (count:66)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1089 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:13575434-13575787	K562	blood:	n/a	n/a
2	ARID3A	chr6:13574403-13575790	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:13574089-13574614	K562	blood:	n/a	n/a
4	ATF2	chr6:13574910-13575330	GM12878	blood:	n/a	n/a
5	ATF2	chr6:13575373-13575734	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr6:13574396-13574966	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr6:13574374-13575731	GM12878	blood:	n/a	n/a
8	ATF2	chr6:13574992-13575659	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF3	chr6:13574402-13574795	K562	blood:	n/a	n/a
10	ATF3	chr6:13575403-13575787	A549	lung:	n/a	n/a
11	BACH1	chr6:13574944-13575015	K562	blood:	n/a	n/a
12	BACH1	chr6:13574431-13575574	H1-hESC	embryonic stem cell:	n/a	n/a
13	BACH1	chr6:13575536-13575736	K562	blood:	n/a	n/a
14	BCL3	chr6:13575021-13575553	A549	lung:	n/a	n/a
15	BCL3	chr6:13575355-13575722	A549	lung:	n/a	n/a
16	BCL3	chr6:13574522-13575204	GM12878	blood:	n/a	chr6:13575001-13575014 chr6:13574893-13574901
17	BCLAF1	chr6:13574391-13575741	K562	blood:	n/a	chr6:13575001-13575014 chr6:13574893-13574901 chr6:13574491-13574500
18	BCLAF1	chr6:13574368-13575719	GM12878	blood:	n/a	chr6:13575001-13575014 chr6:13574893-13574901 chr6:13574491-13574500
19	BCLAF1	chr6:13574403-13575746	GM12878	blood:	n/a	chr6:13575001-13575014 chr6:13574893-13574901 chr6:13574491-13574500
20	BHLHE40	chr6:13573895-13575697	K562	blood:	n/a	chr6:13574455-13574471 chr6:13574644-13574660
21	BHLHE40	chr6:13573928-13575695	HepG2	liver:	n/a	chr6:13574455-13574471 chr6:13574644-13574660
22	BHLHE40	chr6:13574367-13575746	GM12878	blood:	n/a	chr6:13574455-13574471 chr6:13574644-13574660
23	BHLHE40	chr6:13576545-13576603	GM12878	blood:	n/a	n/a
24	BRCA1	chr6:13573754-13575690	Hela-S3	cervix:	n/a	chr6:13574622-13574631
25	BRCA1	chr6:13573977-13574091	HepG2	liver:	n/a	n/a
26	BRCA1	chr6:13574445-13574871	GM12878	blood:	n/a	chr6:13574622-13574631
27	BRCA1	chr6:13574439-13575609	HepG2	liver:	n/a	chr6:13574622-13574631
28	BRCA1	chr6:13573978-13574847	H1-hESC	embryonic stem cell:	n/a	chr6:13574622-13574631
29	CBX3	chr6:13573678-13575818	K562	blood:	n/a	n/a
30	CBX3	chr6:13575108-13575745	K562	blood:	n/a	n/a
31	CCNT2	chr6:13573287-13573548	K562	blood:	n/a	n/a
32	CCNT2	chr6:13574364-13575639	K562	blood:	n/a	chr6:13574810-13574819
33	CEBPB	chr6:13575297-13575676	HepG2	liver:	n/a	n/a
34	CEBPB	chr6:13574906-13575454	GM12878	blood:	n/a	n/a
35	CEBPB	chr6:13575034-13575787	Hela-S3	cervix:	n/a	n/a
36	CEBPB	chr6:13574570-13574797	Hela-S3	cervix:	n/a	n/a
37	CEBPB	chr6:13574454-13574691	HepG2	liver:	n/a	n/a
38	CEBPD	chr6:13574952-13575537	K562	blood:	n/a	n/a
39	CEBPD	chr6:13574369-13575706	HepG2	liver:	n/a	n/a
40	CEBPD	chr6:13574394-13575053	HepG2	liver:	n/a	n/a
41	CHD1	chr6:13573764-13574165	H1-hESC	embryonic stem cell:	n/a	n/a
42	CHD1	chr6:13574514-13574528	H1-hESC	embryonic stem cell:	n/a	n/a
43	CHD1	chr6:13574176-13575666	GM12878	blood:	n/a	chr6:13574811-13574821 chr6:13574840-13574850
44	CHD2	chr6:13574048-13575687	H1-hESC	embryonic stem cell:	n/a	chr6:13574811-13574821 chr6:13574840-13574850
45	CHD2	chr6:13573964-13575566	GM12878	blood:	n/a	chr6:13574811-13574821 chr6:13574840-13574850
46	CHD2	chr6:13574119-13575637	K562	blood:	n/a	chr6:13574811-13574821 chr6:13574840-13574850
47	CHD2	chr6:13573870-13575705	Hela-S3	cervix:	n/a	chr6:13574811-13574821 chr6:13574840-13574850
48	CHD2	chr6:13574040-13575671	HepG2	liver:	n/a	chr6:13574811-13574821 chr6:13574840-13574850
49	CREB1	chr6:13574737-13575640	A549	lung:	n/a	n/a
50	CREB1	chr6:13574380-13575523	H1-hESC	embryonic stem cell:	n/a	n/a

(count:734 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:13575098-13575148	HCF	heart:	n/a
2	chr6:13574296-13574346	NT2-D1	testis:	n/a
3	chr6:13575098-13575148	HCF	heart:	n/a
4	chr6:13574296-13574346	NT2-D1	testis:	n/a
5	chr6:13574150-13574200	IMR90	lung:	fetal
6	chr6:13575098-13575148	Hela-S3	cervix:	n/a
7	chr6:13574371-13574421	U87	brain:	n/a
8	chr6:13574371-13574421	LNCaP	prostate:	n/a
9	chr6:13574863-13574913	ProgFib	skin:	n/a
10	chr6:13574371-13574421	HPAEpiC	pulmonary alveolar:	n/a
11	chr6:13574296-13574346	HCF	heart:	n/a
12	chr6:13574842-13574892	HCT-116	colon:	n/a
13	chr6:13574371-13574421	HCT-116	colon:	n/a
14	chr6:13574034-13574084	LNCaP	prostate:	n/a
15	chr6:13574150-13574200	U87	brain:	n/a
16	chr6:13574150-13574200	AG04450	lung:	fetal
17	chr6:13575098-13575148	HCT-116	colon:	n/a
18	chr6:13574150-13574200	H1-hESC	embryonic stem cell:	embryo
19	chr6:13574034-13574084	CMK	blood:	n/a
20	chr6:13574844-13574894	Hela-S3	cervix:	n/a
21	chr6:13574573-13574623	HUVEC	blood vessel:	n/a
22	chr6:13574573-13574623	GM19239	blood:	n/a
23	chr6:13574573-13574623	LNCaP	prostate:	n/a
24	chr6:13575098-13575148	HUVEC	blood vessel:	n/a
25	chr6:13574573-13574623	HCPEpiC	choroid plexus:	n/a
26	chr6:13574150-13574200	NHBE	bronchial:	n/a
27	chr6:13575098-13575148	GM12891	blood:	n/a
28	chr6:13574897-13574947	IMR90	lung:	fetal
29	chr6:13574844-13574894	AG04450	lung:	fetal
30	chr6:13575449-13575499	HRE	kidney:	n/a
31	chr6:13574842-13574892	AG10803	skin:	n/a
32	chr6:13575449-13575499	AoSMC	blood vessel:	n/a
33	chr6:13574573-13574623	GM06990	blood:	n/a
34	chr6:13574842-13574892	GM06990	blood:	n/a
35	chr6:13575098-13575148	MCF-7	breast:	n/a
36	chr6:13574371-13574421	SAEC	small airway:	n/a
37	chr6:13575449-13575499	HIPEpiC	eye:	n/a
38	chr6:13574296-13574346	PrEC	prostate:	n/a
39	chr6:13574863-13574913	GM12892	blood:	n/a
40	chr6:13574897-13574947	NH-A	brain:	n/a
41	chr6:13574150-13574200	NB4	blood:	n/a
42	chr6:13574863-13574913	HCF	heart:	n/a
43	chr6:13575098-13575148	GM06990	blood:	n/a
44	chr6:13574844-13574894	HCPEpiC	choroid plexus:	n/a
45	chr6:13575449-13575499	BE2_C	brain:	n/a
46	chr6:13575098-13575148	GM12892	blood:	n/a
47	chr6:13574897-13574947	GM06990	blood:	n/a
48	chr6:13574034-13574084	PANC-1	pancreas:	n/a
49	chr6:13574573-13574623	ovcar-3	ovarian:	n/a
50	chr6:13574091-13574141	GM19239	blood:	n/a

(count:66 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:13484664..13490672-chr6:13572714..13577234,9	K562	blood:
2	chr5:151151845..151152390-chr6:13574797..13575459,2	Hela-S3	cervix:
3	chr15:44067639..44068140-chr6:13575131..13575783,2	Hela-S3	cervix:
4	chr6:13572531..13574981-chr6:13813241..13815537,2	K562	blood:
5	chr6:13535769..13538764-chr6:13574933..13577249,3	MCF-7	breast:
6	chr17:57915194..57915741-chr6:13574211..13574814,2	Hela-S3	cervix:
7	chr15:93352658..93353196-chr6:13574785..13575714,3	Hela-S3	cervix:
8	chr6:13572865..13577994-chr6:13612366..13619020,17	K562	blood:
9	chr11:93474297..93475105-chr6:13574782..13575543,2	Hela-S3	cervix:
10	chr6:13575144..13575646-chr6:13614473..13615342,2	Hela-S3	cervix:
11	chr6:13573058..13574612-chr6:13812488..13814819,2	MCF-7	breast:
12	chr6:13574638..13575386-chr7:117823501..117824120,2	Hela-S3	cervix:
13	chr6:13574683..13575262-chr9:139581559..139582101,2	Hela-S3	cervix:
14	chr6:13485388..13489511-chr6:13572660..13577514,13	MCF-7	breast:
15	chr6:13326831..13329117-chr6:13574155..13576632,2	K562	blood:
16	chr20:48808377..48808971-chr6:13575000..13575638,2	Hela-S3	cervix:
17	chr6:13572710..13576955-chr6:13610549..13618685,22	MCF-7	breast:
18	chr6:13572493..13576795-chr6:13677578..13681816,6	K562	blood:
19	chr6:13572897..13576165-chr6:13619318..13622919,5	K562	blood:
20	chr6:13571943..13574615-chr6:13703735..13706256,3	K562	blood:
21	chr1:160312894..160313447-chr6:13574629..13575506,2	HCT-116	colon:
22	chr6:13574892..13575841-chr6:13614462..13615340,2	K562	blood:
23	chr6:13575265..13575767-chr9:136355658..136356179,2	Hela-S3	cervix:
24	chr6:13571943..13574615-chr6:13703735..13705553,2	K562	blood:
25	chr6:13573004..13578027-chr6:13613856..13617870,10	MCF-7	breast:
26	chr1:11967945..11968545-chr6:13574677..13575291,2	Hela-S3	cervix:
27	chr6:13274197..13275936-chr6:13573987..13576342,2	K562	blood:
28	chr18:3623452..3623963-chr6:13575066..13575870,2	Hela-S3	cervix:
29	chr17:75284124..75284998-chr6:13575066..13575572,2	Hela-S3	cervix:
30	chr6:13574305..13575294-chr8:103665947..103666716,2	Hela-S3	cervix:
31	chr6:13406137..13408577-chr6:13573927..13576170,2	MCF-7	breast:
32	chr6:13572897..13576165-chr6:13620913..13622919,3	K562	blood:
33	chr14:100704311..100704901-chr6:13574734..13575396,2	Hela-S3	cervix:
34	chr6:13287477..13291631-chr6:13573758..13576939,3	K562	blood:
35	chr6:13573217..13575552-chr6:13711779..13713289,2	K562	blood:
36	chr6:13397579..13400126-chr6:13573111..13574727,2	MCF-7	breast:
37	chr6:13575661..13578195-chr6:13588968..13591266,4	K562	blood:
38	chr6:13484393..13490113-chr6:13572102..13578017,14	MCF-7	breast:
39	chr6:13280798..13285135-chr6:13573249..13575552,3	K562	blood:
40	chr6:13358275..13360679-chr6:13575096..13577524,3	MCF-7	breast:
41	chr12:52449698..52450253-chr6:13574721..13575261,2	Hela-S3	cervix:
42	chr6:13572776..13574707-chr6:13619444..13621662,2	MCF-7	breast:
43	chr6:13573221..13576787-chr6:13710917..13713733,6	K562	blood:
44	chr1:28995095..28995809-chr6:13574451..13575261,2	HCT-116	colon:
45	chr6:13572923..13577086-chr6:13614342..13617597,6	K562	blood:
46	chr14:67825632..67826631-chr6:13574719..13575473,2	Hela-S3	cervix:
47	chr12:56551727..56552536-chr6:13574659..13575232,2	Hela-S3	cervix:
48	chr6:13574818..13575379-chr7:25164041..25164955,2	Hela-S3	cervix:
49	chr6:13328242..13329088-chr6:13575005..13575601,2	Hela-S3	cervix:
50	chr6:13327393..13331113-chr6:13573725..13577168,7	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RANBP9-2	chr6:13572305-13574446	NONHSAT107810

No data

Variant related genes	Relation type
SIRT5	TF binding region
SIRT5	CpG island
ENSG00000100554	chromatin interactions
ENSG00000100811	chromatin interactions
ENSG00000261071	chromatin interactions
ENSG00000160961	chromatin interactions
ENSG00000038210	chromatin interactions
ENSG00000225921	chromatin interactions
ENSG00000145780	chromatin interactions
ENSG00000096433	chromatin interactions
ENSG00000187461	chromatin interactions
ENSG00000272379	chromatin interactions
ENSG00000145990	chromatin interactions
ENSG00000172115	chromatin interactions
ENSG00000237786	chromatin interactions
ENSG00000199347	chromatin interactions
ENSG00000132819	chromatin interactions
ENSG00000050393	chromatin interactions
ENSG00000062716	chromatin interactions
ENSG00000182919	chromatin interactions
ENSG00000185442	chromatin interactions
ENSG00000010017	chromatin interactions
ENSG00000109618	chromatin interactions
ENSG00000252966	chromatin interactions
ENSG00000122218	chromatin interactions
ENSG00000177556	chromatin interactions
ENSG00000128886	chromatin interactions
ENSG00000145979	chromatin interactions
ENSG00000103274	chromatin interactions
ENSG00000258982	chromatin interactions
ENSG00000131355	chromatin interactions
ENSG00000257809	chromatin interactions
ENSG00000162419	chromatin interactions
ENSG00000092841	chromatin interactions
ENSG00000145907	chromatin interactions
ENSG00000155090	chromatin interactions
ENSG00000166012	chromatin interactions
ENSG00000123358	chromatin interactions
ENSG00000268059	chromatin interactions
ENSG00000162736	chromatin interactions
ENSG00000151247	chromatin interactions
ENSG00000261526	chromatin interactions
ENSG00000215022	chromatin interactions
ENSG00000169692	chromatin interactions
ENSG00000128534	chromatin interactions

Extended variants
information (count: 137 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:137 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs60880054	chr6:13573429-13573430	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
2	rs184017956	chr6:13573439-13573440	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
3	rs534181934	chr6:13573444-13573445	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
4	rs3840544	chr6:13573459-13573460	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
5	rs397841597	chr6:13573466-13573467	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
6	rs200580151	chr6:13573467-13573468	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
7	rs368612140	chr6:13573486-13573487	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
8	rs186972107	chr6:13573505-13573506	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
9	rs191339373	chr6:13573511-13573512	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
10	rs534617760	chr6:13573557-13573558	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
11	rs548350101	chr6:13573611-13573612	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
12	rs370236910	chr6:13573620-13573621	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
13	rs558668463	chr6:13573632-13573633	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
14	rs145451630	chr6:13573643-13573644	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
15	rs184292347	chr6:13573656-13573657	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
16	rs141271093	chr6:13573681-13573682	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
17	rs573515169	chr6:13573682-13573683	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
18	rs536022696	chr6:13573734-13573735	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	Overlapped CNVs	n/a
19	rs539299065	chr6:13573756-13573757	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	Overlapped CNVs	n/a
20	rs187038420	chr6:13573759-13573760	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
21	rs193174921	chr6:13573773-13573774	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
22	rs545248216	chr6:13573795-13573796	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
23	rs564730776	chr6:13573804-13573805	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
24	rs373959815	chr6:13573811-13573812	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
25	rs2804923	chr6:13573863-13573864	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	13 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs576150041	chr6:13573887-13573888	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
27	rs541145416	chr6:13573936-13573937	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
28	rs184979179	chr6:13573978-13573979	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
29	rs530349808	chr6:13574009-13574010	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
30	rs146955850	chr6:13574028-13574029	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
31	rs550391463	chr6:13574044-13574045	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
32	rs537145339	chr6:13574051-13574052	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
33	rs376534767	chr6:13574076-13574077	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
34	rs538928213	chr6:13574135-13574136	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
35	rs568532340	chr6:13574159-13574160	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
36	rs190664981	chr6:13574170-13574171	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
37	rs537148167	chr6:13574185-13574186	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
38	rs532701724	chr6:13574229-13574230	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	15 gene(s)	Overlapped CNVs	n/a
39	rs534314468	chr6:13574274-13574275	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	15 gene(s)	Overlapped CNVs	n/a
40	rs2804924	chr6:13574342-13574343	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs76953304	chr6:13574351-13574352	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	16 gene(s)	Overlapped CNVs	n/a
42	rs534664788	chr6:13574356-13574357	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	16 gene(s)	Overlapped CNVs	n/a
43	rs548309678	chr6:13574380-13574381	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	Overlapped CNVs	n/a
44	rs568193322	chr6:13574457-13574458	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
45	rs536083330	chr6:13574486-13574487	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
46	rs112443954	chr6:13574491-13574492	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	mRNA abundance
47	rs372706978	chr6:13574503-13574504	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
48	rs576141611	chr6:13574532-13574533	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
49	rs377310719	chr6:13574539-13574540	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
50	rs538580422	chr6:13574619-13574620	Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
small cell lung cancer	20016488	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Ovarian cancer	21720365	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Bladder cancer	21909424	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
abnormal development	18461090	CNVD
Cancer	16790693	CNVD
Pancreatic cancer	17952125	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD

Chromatin state (count:588 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13560400-13573800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:13562800-13573600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:13569000-13573600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:13570200-13573600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:13570200-13573800	Weak transcription	Fetal Intestine Large	intestine
6	chr6:13570400-13573800	Weak transcription	Spleen	Spleen
7	chr6:13570600-13573600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:13570600-13573800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:13570800-13573600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:13571000-13573600	Weak transcription	Fetal Stomach	stomach
11	chr6:13571200-13573600	Weak transcription	HSMM	muscle
12	chr6:13571800-13573600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:13571800-13573600	Weak transcription	Lung	lung
14	chr6:13571800-13573800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:13572000-13573600	Weak transcription	Colonic Mucosa	Colon
16	chr6:13572000-13573800	Weak transcription	Primary B cells from cord blood	blood
17	chr6:13572000-13573800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:13572200-13573600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:13572400-13573600	Enhancers	Liver	Liver
20	chr6:13572600-13573600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:13572600-13573800	Enhancers	Brain Cingulate Gyrus	brain
22	chr6:13572800-13573600	Enhancers	Brain Anterior Caudate	brain
23	chr6:13572800-13574000	Weak transcription	Aorta	Aorta
24	chr6:13573000-13573600	Enhancers	K562	blood
25	chr6:13573200-13573600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:13573200-13573600	Enhancers	Right Ventricle	heart
27	chr6:13573200-13573600	Enhancers	Stomach Smooth Muscle	stomach
28	chr6:13573200-13573600	Enhancers	HepG2	liver
29	chr6:13573200-13573800	Enhancers	Fetal Brain Female	brain
30	chr6:13573200-13574000	Enhancers	Brain Substantia Nigra	brain
31	chr6:13573400-13573600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:13573400-13573600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:13573400-13573600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr6:13573400-13573600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr6:13573400-13573600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:13573400-13573600	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr6:13573400-13573600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:13573400-13573600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:13573400-13573600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:13573400-13573600	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr6:13573400-13573600	Enhancers	Duodenum Mucosa	Duodenum
42	chr6:13573400-13573600	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr6:13573400-13573600	Enhancers	Fetal Heart	heart
44	chr6:13573400-13573600	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr6:13573400-13573600	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr6:13573400-13573600	Enhancers	HMEC	breast
47	chr6:13573400-13573600	Enhancers	NHEK	skin
48	chr6:13573400-13573800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:13573400-13573800	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr6:13573400-13573800	Enhancers	Primary hematopoietic stem cells	blood

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