Variant report

Variant	esv33676
Chromosome Location	chr19:21636213-21636669
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF708-2	chr19:21635998-21636579	ENSG00000268119.1
2	lnc-ZNF708-2	chr19:21636352-21636579	ENSG00000268119.1
3	lnc-ZNF708-2	chr19:21636352-21636579	ENSG00000268119.1

Extended variants
information (count: 20 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2562442	chr19:21636240-21636241	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs552462579	chr19:21636268-21636269	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs570865660	chr19:21636301-21636302	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs182796032	chr19:21636306-21636307	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs550229569	chr19:21636311-21636312	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs112890717	chr19:21636320-21636321	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs367913716	chr19:21636394-21636395	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs139992993	chr19:21636416-21636417	Strong transcription ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs554455574	chr19:21636433-21636434	Strong transcription ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs141833191	chr19:21636453-21636454	Strong transcription ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs533326379	chr19:21636481-21636482	Strong transcription ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs534031724	chr19:21636538-21636539	Strong transcription ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs558912370	chr19:21636544-21636545	Strong transcription ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs547290279	chr19:21636550-21636551	Strong transcription ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs187442417	chr19:21636593-21636594	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs566798928	chr19:21636594-21636595	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs11325788	chr19:21636622-21636623	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs398034251	chr19:21636625-21636626	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs374916641	chr19:21636656-21636657	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs544601803	chr19:21636657-21636658	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21624600-21636400	Weak transcription	Fetal Kidney	kidney
2	chr19:21629800-21641400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr19:21630000-21642000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr19:21630200-21643800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr19:21630400-21643800	ZNF genes & repeats	Dnd41	blood
6	chr19:21631000-21638400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:21631800-21638200	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr19:21632000-21637200	Weak transcription	Primary T cells from cord blood	blood
9	chr19:21632200-21637000	Weak transcription	Fetal Lung	lung
10	chr19:21632200-21638000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:21632200-21638000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:21632400-21637000	Weak transcription	Ovary	ovary
13	chr19:21633600-21637000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr19:21633800-21641400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr19:21633800-21641400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr19:21634400-21636400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr19:21634600-21636400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr19:21634600-21636400	Weak transcription	Fetal Stomach	stomach
19	chr19:21634600-21636600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr19:21634600-21637400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr19:21634600-21641600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr19:21634800-21636400	Weak transcription	Brain Germinal Matrix	brain
23	chr19:21634800-21637400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr19:21635200-21637200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr19:21635600-21637400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:21635600-21642000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr19:21635600-21642000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr19:21635800-21636800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr19:21635800-21637400	Strong transcription	H9 Cell Line	embryonic stem cell
30	chr19:21635800-21638400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr19:21635800-21638400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr19:21635800-21641200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr19:21636000-21637400	Weak transcription	Thymus	Thymus
34	chr19:21636200-21636600	ZNF genes & repeats	Fetal Brain Female	brain
35	chr19:21636200-21638200	ZNF genes & repeats	Fetal Intestine Large	intestine
36	chr19:21636200-21641000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
37	chr19:21636400-21636600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr19:21636400-21636600	ZNF genes & repeats	Fetal Stomach	stomach
39	chr19:21636400-21636800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
40	chr19:21636400-21636800	ZNF genes & repeats	Brain Germinal Matrix	brain
41	chr19:21636400-21636800	Strong transcription	Fetal Kidney	kidney
42	chr19:21636600-21637400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr19:21636600-21637400	Weak transcription	Fetal Stomach	stomach
44	chr19:21636600-21638600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr19:21636600-21639800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

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