Variant report

Variant	esv3369982
Chromosome Location	chr10:39120257-39137566
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-19	chr10:39122410-39122484	NONHSAT012845
2	lnc-ZNF37A-19	chr10:39121414-39121491	NONHSAT012845

Extended variants
information (count: 3111 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:3111 , 50 per page) page: 1 2 3 4 5 6 7 ... 63

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs533042706	chr10:39120261-39120262	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs367837713	chr10:39120266-39120267	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs371548294	chr10:39120267-39120268	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs546899465	chr10:39120272-39120273	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs36195655	chr10:39120277-39120278	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs566500303	chr10:39120283-39120284	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs200887464	chr10:39120302-39120303	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs201538880	chr10:39120304-39120305	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs201880518	chr10:39120307-39120308	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs375774581	chr10:39120308-39120309	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs200201697	chr10:39120315-39120316	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs200985463	chr10:39120319-39120320	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs113422911	chr10:39120323-39120324	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs200483290	chr10:39120325-39120326	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs201724958	chr10:39120328-39120329	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs549109478	chr10:39120329-39120330	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs568812705	chr10:39120330-39120331	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs375676959	chr10:39120340-39120341	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs76404105	chr10:39120347-39120348	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs200268218	chr10:39120348-39120349	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs557241504	chr10:39120365-39120366	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs141794881	chr10:39120369-39120370	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs137929588	chr10:39120392-39120393	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs144548685	chr10:39120393-39120394	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs142990182	chr10:39120394-39120395	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs148762749	chr10:39120395-39120396	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs529096687	chr10:39120398-39120399	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs202214856	chr10:39120400-39120401	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs539774747	chr10:39120401-39120402	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs77578294	chr10:39120402-39120403	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs143311051	chr10:39120404-39120405	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs369015482	chr10:39120408-39120409	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs372620161	chr10:39120409-39120410	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs575621063	chr10:39120410-39120411	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs437781	chr10:39120412-39120413	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs564159321	chr10:39120415-39120416	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs533126376	chr10:39120416-39120417	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs546958372	chr10:39120417-39120418	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs560448117	chr10:39120419-39120420	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs548756591	chr10:39120425-39120426	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs74217240	chr10:39120428-39120429	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs528900186	chr10:39120432-39120433	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs74184010	chr10:39120436-39120437	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs548972255	chr10:39120438-39120439	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs200347704	chr10:39120446-39120447	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs75217212	chr10:39120454-39120455	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs201408310	chr10:39120462-39120463	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs562474650	chr10:39120464-39120465	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs142019529	chr10:39120470-39120471	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs79743149	chr10:39120473-39120474	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:235 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
4	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
5	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
7	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
10	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
21	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
22	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
23	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
24	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
25	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
26	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
27	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
29	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
30	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
31	chr10:39093800-39130000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
32	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
34	chr10:39096600-39121600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:39102600-39121600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:39102800-39134400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
37	chr10:39102800-39154800	ZNF genes & repeats	Brain Anterior Caudate	brain
38	chr10:39102800-39155000	ZNF genes & repeats	Fetal Heart	heart
39	chr10:39103000-39121600	ZNF genes & repeats	GM12878-XiMat	blood
40	chr10:39103000-39155000	ZNF genes & repeats	Brain Substantia Nigra	brain
41	chr10:39103400-39121600	ZNF genes & repeats	K562	blood
42	chr10:39103800-39124200	ZNF genes & repeats	HUVEC	blood vessel
43	chr10:39104600-39154800	ZNF genes & repeats	Colonic Mucosa	Colon
44	chr10:39113800-39121600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
45	chr10:39113800-39121600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
46	chr10:39113800-39121600	ZNF genes & repeats	Colon Smooth Muscle	Colon
47	chr10:39113800-39121600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
48	chr10:39113800-39129400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:39113800-39135400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:39114000-39121600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links