Variant report
| Variant | esv3370603 |
|---|---|
| Chromosome Location | chr11:26077976-26079874 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs566993406 | chr11:26079408-26079409 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs185513807 | chr11:26079411-26079412 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs145575565 | chr11:26079418-26079419 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs567840656 | chr11:26079476-26079477 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs148870596 | chr11:26079478-26079479 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs115950196 | chr11:26079503-26079504 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs559791307 | chr11:26079510-26079511 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs189926136 | chr11:26079559-26079560 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs368922374 | chr11:26079565-26079566 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs182277607 | chr11:26079581-26079582 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs572859891 | chr11:26079645-26079646 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs184950613 | chr11:26079653-26079654 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs7927402 | chr11:26079656-26079657 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 14 | rs7927514 | chr11:26079675-26079676 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 15 | rs544552602 | chr11:26079676-26079677 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs562786842 | chr11:26079697-26079698 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs7942563 | chr11:26079755-26079756 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 18 | rs545424872 | chr11:26079773-26079774 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs560499394 | chr11:26079786-26079787 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs571240303 | chr11:26079849-26079850 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs190731476 | chr11:26079855-26079856 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs549456224 | chr11:26079862-26079863 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs538207184 | chr11:26079866-26079867 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:52)
| Disease | PMID | Source |
|---|---|---|
| Burkitt''s lymphoma | 19759907 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Melanoma | 18172304 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Parathyroid adenoma | 22454399 | CNVD |
| Chordoma | 21602918 | CNVD |
| Breast cancer | 21949216 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 19222835 | CNVD |
| T-cell acute lymphoblastic leukemia | 20065082 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Beckwith-Wiedemann syndrome | 21518781 | CNVD |
| Wilms tumour | 21518781 | CNVD |
| Hepatoblastoma | 21518781 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Autism | 22495311 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Non-small cell lung cancer | 21385341 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Breast cancer | 21785460 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Congenital diaphragmatic hernia | 21525063 | CNVD |
| Renal cell carcinoma | 18194544 | CNVD |
| Potocki-Shaffer syndrome | 19222835 | CNVD |
| WAGR syndrome | 19222835 | CNVD |
| Chordoma | 18071362 | CNVD |
| Autism | 22102821 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Breast cancer | 21364760 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Bipolar disorder | 19114987 | CNVD |
| Schizophrenia | 23813976 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26079400-26079600 | ZNF genes & repeats | Fetal Kidney | kidney |
| 2 | chr11:26079600-26091600 | Weak transcription | Fetal Kidney | kidney |
