Variant report

Variant	esv3370663
Chromosome Location	chr8:65025447-65049140
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP7B1-6	chr8:65046005-65046071	ENSG00000253554.1
2	lnc-CYP7B1-6	chr8:65046005-65046071	ENSG00000253554.1
3	lnc-CYP7B1-6	chr8:65046005-65046071	ENSG00000253554.1

Extended variants
information (count: 751 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:751 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs563279270	chr8:65025585-65025586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs530744528	chr8:65025600-65025601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs559248135	chr8:65025625-65025626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs575700930	chr8:65025690-65025691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs78978919	chr8:65025710-65025711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs564006646	chr8:65025714-65025715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs375274603	chr8:65025724-65025725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs1867492	chr8:65025766-65025767	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs546341085	chr8:65025785-65025786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs561198274	chr8:65025791-65025792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs148291815	chr8:65028603-65028604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs74401189	chr8:65028609-65028610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs577271538	chr8:65028686-65028687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs561917500	chr8:65028724-65028725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs529617746	chr8:65028813-65028814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs2166124	chr8:65028814-65028815	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs62519732	chr8:65028821-65028822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562804770	chr8:65028835-65028836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs533357447	chr8:65028921-65028922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs551512622	chr8:65028927-65028928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs207469291	chr8:65029003-65029004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs150162768	chr8:65029023-65029024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs117207326	chr8:65029028-65029029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs548991883	chr8:65029108-65029109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs567172714	chr8:65029149-65029150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs531609247	chr8:65029189-65029190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs138663213	chr8:65029252-65029253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs370373605	chr8:65029259-65029260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs541791052	chr8:65029267-65029268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs556196716	chr8:65029299-65029300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs571522856	chr8:65029349-65029350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs76806943	chr8:65029386-65029387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs561532855	chr8:65029421-65029422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs538883939	chr8:65029429-65029430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs527529383	chr8:65029461-65029462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs540717212	chr8:65029488-65029489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs554001725	chr8:65029502-65029503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs189705018	chr8:65029503-65029504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs547042337	chr8:65029567-65029568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs570220843	chr8:65029569-65029570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs532755922	chr8:65029570-65029571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs560561048	chr8:65029611-65029612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs555800270	chr8:65029666-65029667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs373382384	chr8:65029667-65029668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs76086096	chr8:65029670-65029671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs74475727	chr8:65029694-65029695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs533441148	chr8:65029697-65029698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545236471	chr8:65029745-65029746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs560293364	chr8:65029749-65029750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs565083812	chr8:65029805-65029806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Salivary gland tumor	18059337	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Sezary syndrome	18413736	CNVD
Colorectal cancer	21645411	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65025400-65025800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:65028600-65038400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:65034000-65035200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:65035200-65036400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:65038400-65039400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:65038400-65040400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:65039400-65049200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:65040400-65044200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:65040600-65047600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:65044200-65046800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:65046800-65059600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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