Variant report
| Variant | esv3370837 |
|---|---|
| Chromosome Location | chr10:51911971-51914819 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs373734862 | chr10:51912610-51912611 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs111416498 | chr10:51912616-51912617 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs2805271 | chr10:51912623-51912624 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs377528559 | chr10:51912644-51912645 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs2813269 | chr10:51912648-51912649 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs548578905 | chr10:51912708-51912709 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs568438105 | chr10:51912778-51912779 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs2813267 | chr10:51912781-51912782 | Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
| 9 | rs527704853 | chr10:51912799-51912800 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs547831987 | chr10:51912806-51912807 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs570862211 | chr10:51912839-51912840 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs540021628 | chr10:51912895-51912896 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs550149056 | chr10:51912929-51912930 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs112620061 | chr10:51912958-51912959 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs112475578 | chr10:51912961-51912962 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs2813266 | chr10:51912962-51912963 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:64)
| Disease | PMID | Source |
|---|---|---|
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Autism | 18414403 | CNVD |
| Cockayne syndrome | 18421352 | CNVD |
| Glioblastoma | 16823260 | CNVD |
| Medulloblastoma | 16968546 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Cancer | 21183584 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Glioma | 21971842 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Papillary thyroid carcinoma | 21436994 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Obesity | 21956041 | CNVD |
| Renal cell carcinoma | 18765545 | CNVD |
| Developmental delay | 21948486 | CNVD |
| Dysmorphic features | 21948486 | CNVD |
| Epilepsy | 21948486 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Intellectual disability | 21948486 | CNVD |
| Intellectual disability | 22045946 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Breast cancer | 21364760 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| skeletal anomalies | 21948486 | CNVD |
| Autism | 21948486 | CNVD |
| speech delay | 21948486 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Breast cancer | 21990379 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Autism | 20841430 | CNVD |
| Cancer | 20164919 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:51912600-51913000 | Active TSS | Brain Germinal Matrix | brain |
