Variant report

Variant	esv3371301
Chromosome Location	chr2:35384704-35385599
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr2:35385461-35385703	HepG2	liver:	n/a	chr2:35385538-35385549

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:35385075..35387812-chr2:35387950..35390253,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CRIM1-1	chr2:35384150-35384830	ENSG00000226994.3
2	lnc-CRIM1-1	chr2:35384613-35385344	ENSG00000226994.3

Variant related genes	Relation type
ENSG00000226994	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200924885	chr2:35384709-35384710	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs570441008	chr2:35384780-35384781	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs77840088	chr2:35384905-35384906	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs546504790	chr2:35384959-35384960	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs113095876	chr2:35384965-35384966	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs114913884	chr2:35384983-35384984	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs541284030	chr2:35384984-35384985	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs189884352	chr2:35384993-35384994	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs567974236	chr2:35385087-35385088	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs575022997	chr2:35385099-35385100	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs145383722	chr2:35385134-35385135	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs563833382	chr2:35385164-35385165	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs141034664	chr2:35385212-35385213	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs371531605	chr2:35385280-35385281	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs546237273	chr2:35385298-35385299	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs376623169	chr2:35385301-35385302	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs559744767	chr2:35385307-35385308	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs528401319	chr2:35385313-35385314	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs79007578	chr2:35385475-35385476	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs539110907	chr2:35385507-35385508	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs141797410	chr2:35385571-35385572	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs6728635	chr2:35385572-35385573	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs182052932	chr2:35385594-35385595	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Bladder cancer	21909424	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	19521722	CNVD
Autism	18522746	CNVD
Breast cancer	21364760	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	18927303	CNVD
Hereditary gingival fibromatosis	19633868	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	16397240	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Neurocytoma	17123091	CNVD
Autism	22495309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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